当前解析结果
SmilChr08G000790| 统一新 Gene ID | SmilChr08G000790 |
|---|---|
| 名称 | SmilChr08G000790 |
| 描述 | pentatricopeptide repeat-containing protein At1g02370, mitochondrial-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 5819997 - 5822606 / + |
| NCBI Gene ID | LOC131000372 |
|---|---|
| GeneID | 131000372 |
| locus_tag | - |
| NCBI Name | LOC131000372 |
| 原始查询 | SmilChr08G000790 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pentatricopeptide repeat-containing protein At1g02370, mitochondrial-like |
| 产物 | pentatricopeptide repeat-containing protein At1g02370%2C mitochondrial-like |
| Arabidopsis | AT1G02370 (AT1G02370)Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837735] identity=41.3; qcov=0.986; evalue=8.71e-128; confidence=medium |
| Rice | Os01g0301000- identity=41.5; qcov=0.924; evalue=8.17e-109; confidence=medium |
| GO | GO:0005515 (protein binding); GO:0005739 (mitochondrion) |
| KEGG | - |
| Pfam | PF01535 (PPR); PF13041 (PPR_2); PF13812 (PPR_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000372 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057782229.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057782229.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057782229.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057782229.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057782229.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:5820054 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C12 |
Chr8:5820069 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A14,B23 |
Chr8:5820101 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B30 |
Chr8:5820278 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B113,B31,B47,B63,B91 |
Chr8:5821011 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:5821173 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B85,C85 |
Chr8:5821599 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B105,B110,C10,D2 |
Chr8:5821684 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr8:5821726 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A14,B23 |
Chr8:5821861 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A16,C12,C8 |
Chr8:5821954 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B68 |
Chr8:5822115 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B41,B66,B8,C22,C74 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057782229.1PF01535
PPR 136-164 aa
PF13812
PPR_3 156-212 aa
PF01535
PPR 172-200 aa
PF13041
PPR_2 172-215 aa
PF13812
PPR_3 193-250 aa
PF13041
PPR_2 202-248 aa
PF01535
PPR 206-232 aa
PF01535
PPR 349-369 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057782229.1 |
Pfam | PF01535 |
PPR | Repeat | 136 | 164 | 1.1e-24 | 85.6 | PPR repeat |
XP_057782229.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 156 | 212 | 1.5e-11 | 44.9 | Pentatricopeptide repeat domain |
XP_057782229.1 |
Pfam | PF01535 |
PPR | Repeat | 172 | 200 | 1.1e-24 | 85.6 | PPR repeat |
XP_057782229.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 172 | 215 | 7.5e-26 | 90.7 | PPR repeat family |
XP_057782229.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 193 | 250 | 1.5e-11 | 44.9 | Pentatricopeptide repeat domain |
XP_057782229.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 202 | 248 | 7.5e-26 | 90.7 | PPR repeat family |
XP_057782229.1 |
Pfam | PF01535 |
PPR | Repeat | 206 | 232 | 1.1e-24 | 85.6 | PPR repeat |
XP_057782229.1 |
Pfam | PF01535 |
PPR | Repeat | 349 | 369 | 1.1e-24 | 85.6 | PPR repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。