当前解析结果
SmilChr08G000792| 统一新 Gene ID | SmilChr08G000792 |
|---|---|
| 名称 | SmilChr08G000792 |
| 描述 | pentatricopeptide repeat-containing protein At1g02370, mitochondrial-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 5834111 - 5836701 / + |
| NCBI Gene ID | LOC131000376 |
|---|---|
| GeneID | 131000376 |
| locus_tag | - |
| NCBI Name | LOC131000376 |
| 原始查询 | SmilChr08G000792 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pentatricopeptide repeat-containing protein At1g02370, mitochondrial-like |
| 产物 | pentatricopeptide repeat-containing protein At1g02370%2C mitochondrial-like |
| Arabidopsis | AT1G02370 (AT1G02370)Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837735] identity=38.8; qcov=0.992; evalue=4.75e-119; confidence=medium |
| Rice | Os01g0301000- identity=36.6; qcov=0.901; evalue=5.54e-95; confidence=medium |
| GO | GO:0005515 (protein binding); GO:0005739 (mitochondrion) |
| KEGG | - |
| Pfam | PF01535 (PPR); PF13041 (PPR_2); PF13812 (PPR_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000376 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057782233.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057782233.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057782233.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057782233.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057782233.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:5834231 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A1,B19,B7 |
Chr8:5834410 |
C |
CG |
1bp_insertion | frameshift_variant | 2 | B108,B115 |
Chr8:5834410 |
C |
CG |
1bp_insertion | CDS_variant | 2 | B108,B115 |
Chr8:5834481 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B113,B26,B88,C39 |
Chr8:5835378 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C74 |
Chr8:5835400 |
AG |
A |
1bp_deletion | frameshift_variant | 60 | A13,A20,A21,A23,A25,A7,B10,B102,B107,B109,B11,B112,B123,B124,B135,B14,B140,B17,B2,B24,B25,B28,B29,B34,B36,B44,B46,B5,B56,B58,B64,B7,B78,B80,B89,B9,B90,B92,B96,B98,B99,C18,C22,C31,C33,C34,C38,C43,C44,C46,C48,C52,C56,C57,C72,C78,C82,C85,C87,C9 |
Chr8:5835636 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B135,C46 |
Chr8:5835757 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B1,B136 |
Chr8:5835846 |
C |
T |
EMS_canonical_SNV | stop_gained | 2 | B135,C46 |
Chr8:5835846 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B135,C46 |
Chr8:5836064 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B127,B97 |
Chr8:5836137 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C14,D8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057782233.1PF01535
PPR 154-182 aa
PF01535
PPR 190-218 aa
PF13041
PPR_2 190-232 aa
PF13812
PPR_3 209-251 aa
PF01535
PPR 224-250 aa
PF01535
PPR 366-387 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057782233.1 |
Pfam | PF01535 |
PPR | Repeat | 154 | 182 | 5.9e-24 | 83.3 | PPR repeat |
XP_057782233.1 |
Pfam | PF01535 |
PPR | Repeat | 190 | 218 | 5.9e-24 | 83.3 | PPR repeat |
XP_057782233.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 190 | 232 | 4.3e-20 | 72.3 | PPR repeat family |
XP_057782233.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 209 | 251 | 2e-08 | 34.9 | Pentatricopeptide repeat domain |
XP_057782233.1 |
Pfam | PF01535 |
PPR | Repeat | 224 | 250 | 5.9e-24 | 83.3 | PPR repeat |
XP_057782233.1 |
Pfam | PF01535 |
PPR | Repeat | 366 | 387 | 5.9e-24 | 83.3 | PPR repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。