Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000797`

染色体: Chr08 坐标: 5853149-5857388 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000797`
名称	SmilChr08G000797
描述	pentatricopeptide repeat-containing protein GUN1, chloroplastic
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	5853149 - 5857388 / `+`

ID 对照

NCBI Gene ID	`LOC131000380`
GeneID	`131000380`
locus_tag	`-`
NCBI Name	`LOC131000380`
原始查询	`SmilChr08G000797`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein GUN1, chloroplastic
产物	pentatricopeptide repeat-containing protein GUN1%2C chloroplastic
Arabidopsis	`AT2G31400` (GUN1) s uncoupled 1 [Source:NCBI gene (formerly Entrezgene);Acc:817698] identity=62; qcov=0.964; evalue=0; confidence=high
Rice	`Os12g0562300` - identity=56.1; qcov=0.377; evalue=1.51e-114; confidence=low
GO	GO:0005515 (protein binding); GO:0009507 (chloroplast)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro	-
eggNOG	-
NR	GeneID:131000380

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057782236.1`
2	Chloroplast stroma	叶绿体基质	0.60000	`XP_057782236.1`
3	Nucleus	细胞核	0.00000	`XP_057782236.1`
4	Chromosome	染色体	0.00000	`XP_057782236.1`
5	Centromere	着丝粒	0.00000	`XP_057782236.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:5853512`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B119,B26,B70,C30,C83
`Chr8:5853616`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B66,B8,D7
`Chr8:5853689`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B100
`Chr8:5853884`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C15
`Chr8:5854115`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B132
`Chr8:5854292`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B132
`Chr8:5854429`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B103,B91
`Chr8:5854565`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B132
`Chr8:5854652`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B100
`Chr8:5854736`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B31,B95,C4
`Chr8:5854792`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B126,B137,B32,C56
`Chr8:5854861`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C15

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782236.1

851 aa

426

851

PPR

TPR_24

PPR_3

PPR_2

PPR

PPR_long

PPR

PPR_3

PPR

PPR_2

PPR_long

PPR_3

PPR_1

PPR_2

PPR

PPR_1

PPR_3

PPR

PPR_2

TPR_24

PPR_3

PPR

PPR_3

PPR_1

PPR_2

PPR

PPR_1

PPR

PPR_2

TPR_24

PPR_3

PPR_1

PPR_2

PPR

PPR_3

PPR

PF01535 PPR 179-202 aa PF23276 TPR_24 181-275 aa PF13812 PPR_3 197-257 aa PF13041 PPR_2 209-257 aa PF01535 PPR 212-241 aa PF17177 PPR_long 217-344 aa PF01535 PPR 246-277 aa PF13812 PPR_3 261-293 aa PF01535 PPR 282-311 aa PF13041 PPR_2 282-327 aa PF17177 PPR_long 300-441 aa PF13812 PPR_3 302-361 aa PF12854 PPR_1 315-342 aa PF13041 PPR_2 315-363 aa PF01535 PPR 317-345 aa PF12854 PPR_1 346-378 aa PF13812 PPR_3 350-396 aa PF01535 PPR 352-382 aa PF13041 PPR_2 356-393 aa PF23276 TPR_24 358-482 aa PF13812 PPR_3 373-416 aa PF01535 PPR 387-417 aa PF13812 PPR_3 410-467 aa PF12854 PPR_1 416-448 aa PF13041 PPR_2 419-468 aa PF01535 PPR 422-451 aa PF12854 PPR_1 451-477 aa PF01535 PPR 458-487 aa PF13041 PPR_2 458-503 aa PF23276 TPR_24 471-562 aa PF13812 PPR_3 481-537 aa PF12854 PPR_1 486-517 aa PF13041 PPR_2 490-536 aa PF01535 PPR 493-522 aa PF13812 PPR_3 593-624 aa PF01535 PPR 615-641 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782236.1`	Pfam	`PF01535`	PPR	Repeat	179	202	1.2e-77	251.6	PPR repeat
`XP_057782236.1`	Pfam	`PF23276`	TPR_24	Repeat	181	275	8.9e-33	113.7	Pentatricopeptide repeat-containing protein
`XP_057782236.1`	Pfam	`PF13812`	PPR_3	Repeat	197	257	5.6e-76	251.3	Pentatricopeptide repeat domain
`XP_057782236.1`	Pfam	`PF13041`	PPR_2	Repeat	209	257	1.3e-93	307.7	PPR repeat family
`XP_057782236.1`	Pfam	`PF01535`	PPR	Repeat	212	241	1.2e-77	251.6	PPR repeat
`XP_057782236.1`	Pfam	`PF17177`	PPR_long	Repeat	217	344	1.1e-35	123.7	Pentacotripeptide-repeat region of PRORP
`XP_057782236.1`	Pfam	`PF01535`	PPR	Repeat	246	277	1.2e-77	251.6	PPR repeat
`XP_057782236.1`	Pfam	`PF13812`	PPR_3	Repeat	261	293	5.6e-76	251.3	Pentatricopeptide repeat domain
`XP_057782236.1`	Pfam	`PF01535`	PPR	Repeat	282	311	1.2e-77	251.6	PPR repeat
`XP_057782236.1`	Pfam	`PF13041`	PPR_2	Repeat	282	327	1.3e-93	307.7	PPR repeat family
`XP_057782236.1`	Pfam	`PF17177`	PPR_long	Repeat	300	441	1.1e-35	123.7	Pentacotripeptide-repeat region of PRORP
`XP_057782236.1`	Pfam	`PF13812`	PPR_3	Repeat	302	361	5.6e-76	251.3	Pentatricopeptide repeat domain
`XP_057782236.1`	Pfam	`PF12854`	PPR_1	Repeat	315	342	8.2e-85	278.9	PPR repeat
`XP_057782236.1`	Pfam	`PF13041`	PPR_2	Repeat	315	363	1.3e-93	307.7	PPR repeat family
`XP_057782236.1`	Pfam	`PF01535`	PPR	Repeat	317	345	1.2e-77	251.6	PPR repeat
`XP_057782236.1`	Pfam	`PF12854`	PPR_1	Repeat	346	378	8.2e-85	278.9	PPR repeat
`XP_057782236.1`	Pfam	`PF13812`	PPR_3	Repeat	350	396	5.6e-76	251.3	Pentatricopeptide repeat domain
`XP_057782236.1`	Pfam	`PF01535`	PPR	Repeat	352	382	1.2e-77	251.6	PPR repeat
`XP_057782236.1`	Pfam	`PF13041`	PPR_2	Repeat	356	393	1.3e-93	307.7	PPR repeat family
`XP_057782236.1`	Pfam	`PF23276`	TPR_24	Repeat	358	482	8.9e-33	113.7	Pentatricopeptide repeat-containing protein
`XP_057782236.1`	Pfam	`PF13812`	PPR_3	Repeat	373	416	5.6e-76	251.3	Pentatricopeptide repeat domain
`XP_057782236.1`	Pfam	`PF01535`	PPR	Repeat	387	417	1.2e-77	251.6	PPR repeat
`XP_057782236.1`	Pfam	`PF13812`	PPR_3	Repeat	410	467	5.6e-76	251.3	Pentatricopeptide repeat domain
`XP_057782236.1`	Pfam	`PF12854`	PPR_1	Repeat	416	448	8.2e-85	278.9	PPR repeat
`XP_057782236.1`	Pfam	`PF13041`	PPR_2	Repeat	419	468	1.3e-93	307.7	PPR repeat family
`XP_057782236.1`	Pfam	`PF01535`	PPR	Repeat	422	451	1.2e-77	251.6	PPR repeat
`XP_057782236.1`	Pfam	`PF12854`	PPR_1	Repeat	451	477	8.2e-85	278.9	PPR repeat
`XP_057782236.1`	Pfam	`PF01535`	PPR	Repeat	458	487	1.2e-77	251.6	PPR repeat
`XP_057782236.1`	Pfam	`PF13041`	PPR_2	Repeat	458	503	1.3e-93	307.7	PPR repeat family
`XP_057782236.1`	Pfam	`PF23276`	TPR_24	Repeat	471	562	8.9e-33	113.7	Pentatricopeptide repeat-containing protein
`XP_057782236.1`	Pfam	`PF13812`	PPR_3	Repeat	481	537	5.6e-76	251.3	Pentatricopeptide repeat domain
`XP_057782236.1`	Pfam	`PF12854`	PPR_1	Repeat	486	517	8.2e-85	278.9	PPR repeat
`XP_057782236.1`	Pfam	`PF13041`	PPR_2	Repeat	490	536	1.3e-93	307.7	PPR repeat family
`XP_057782236.1`	Pfam	`PF01535`	PPR	Repeat	493	522	1.2e-77	251.6	PPR repeat
`XP_057782236.1`	Pfam	`PF13812`	PPR_3	Repeat	593	624	5.6e-76	251.3	Pentatricopeptide repeat domain
`XP_057782236.1`	Pfam	`PF01535`	PPR	Repeat	615	641	1.2e-77	251.6	PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057926253.1
AATATTTTGGTGAAAATAACAATGTCTGAATGCATGAGCAACTGAATCTTCGCCCTTCACTGTTCCAGGTTCACATAAAAAAATGGAAAAAAATCTTAAAAAAAAATAAATGGATGAAAAGAAGTAGGATACAAAAAGTAAAAAGCAGTGATCTCACGAGTGTAATCTTTTTAGCTGACTCTCTTTCTCTGTAGAATCTTTGATCACTCTCTCTCTAAACAGTCAAAAAAGAGGCCAAAAAAACCCAATCTTTTTATCTT...

CDS

1 records

下载 CDS FASTA

LOC131000380
ATGGCCTCCTCAACTCCGCCAGCACACTGTACACTCACCACCACCAAACCCTACCAGAACCACCACCTCCAGCATGCCCACAACCGCCATCGCCACAACCCCACCTCCTCCCACCACCACCAGAGCTGGCGGCCCCCTCAGGTTTCTCTAAACAGCCAGGCCTCTCACGCCGCCGCCTGTCCGGGTCCTCCGCCGCCCGCCGTCGCGAGGCCCAGCTTTCCATGTCTCTCCGATTTCTCCGGCCGCCGCTCCACCAGGTG...

Protein

1 records

下载 Protein FASTA

XP_057782236.1
MASSTPPAHCTLTTTKPYQNHHLQHAHNRHRHNPTSSHHHQSWRPPQVSLNSQASHAAACPGPPPPAVARPSFPCLSDFSGRRSTRCVSKMHFGRPRSTTTRHSAAAEEALQLALSRGGEVSNIDNILVDFQPKLRASDDYTFLLRELGNRGDWVNAMRCFDFAISLEKRRNEKGKLASSMISTLGRLGKADLAKKVFDVAVNEGYGNTVYAYSALISAYAKSGYCDEAIGVFRSMKDSGLKPNLVTYNALIDACGKGGA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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