当前解析结果
SmilChr08G000811| 统一新 Gene ID | SmilChr08G000811 |
|---|---|
| 名称 | SmilChr08G000811 |
| 描述 | argininosuccinate synthase, chloroplastic-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 5969595 - 5974117 / + |
| NCBI Gene ID | LOC131000393 |
|---|---|
| GeneID | 131000393 |
| locus_tag | - |
| NCBI Name | LOC131000393 |
| 原始查询 | SmilChr08G000811 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | argininosuccinate synthase, chloroplastic-like |
| 产物 | argininosuccinate synthase%2C chloroplastic-like |
| Arabidopsis | AT4G24830 (AT4G24830)arginosuccinate synthase family [Source:NCBI gene (formerly Entrezgene);Acc:828586] identity=81.54; qcov=0.901; evalue=0.0; confidence=high |
| Rice | Os12g0235800- identity=81.84; qcov=0.866; evalue=0.0; confidence=high |
| GO | GO:0000050 (urea cycle); GO:0000053 (GO:0000053); GO:0004055 (argininosuccinate synthase activity); GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0006526 (L-arginine biosynthetic process) |
| KEGG | smil00220 (Arginine biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00250 (Alanine, aspartate and glutamate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00764 (Arginosuc_synth); PF20979 (Arginosuc_syn_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000393 |
| Rank | 定位位置 | 中文 | 五折投票比例 | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057782251.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 1.00000 | XP_057782251.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:5970189 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr8:5970353 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B88 |
Chr8:5970354 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B12 |
Chr8:5970533 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B88 |
Chr8:5970543 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B115 |
Chr8:5970543 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B115 |
Chr8:5971156 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C61 |
Chr8:5972207 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B2,B46,C6,C80 |
Chr8:5973223 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B42,B43 |
Chr8:5973501 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B105,B133,B48,C42,C74 |
Chr8:5973624 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B100,C18,C43,C44 |
Chr8:5973676 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B2,B46 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057782251.1PF00764
Arginosuc_synth 98-260 aa
PF20979
Arginosuc_syn_C 269-486 aa
XP_057782252.1PF00764
Arginosuc_synth 98-260 aa
PF20979
Arginosuc_syn_C 269-486 aa
XP_057782253.1PF00764
Arginosuc_synth 98-260 aa
PF20979
Arginosuc_syn_C 269-486 aa
XP_057782254.1PF00764
Arginosuc_synth 98-260 aa
PF20979
Arginosuc_syn_C 269-486 aa
XP_057782255.1PF00764
Arginosuc_synth 98-260 aa
PF20979
Arginosuc_syn_C 269-486 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057782251.1 |
Pfam | PF00764 |
Arginosuc_synth | Domain | 98 | 260 | 2.3e-68 | 230.0 | Arginosuccinate synthase N-terminal HUP domain |
XP_057782251.1 |
Pfam | PF20979 |
Arginosuc_syn_C | Domain | 269 | 486 | 4.1e-81 | 272.5 | Arginosuccinate synthase C-terminal domain |
XP_057782252.1 |
Pfam | PF00764 |
Arginosuc_synth | Domain | 98 | 260 | 2.3e-68 | 230.0 | Arginosuccinate synthase N-terminal HUP domain |
XP_057782252.1 |
Pfam | PF20979 |
Arginosuc_syn_C | Domain | 269 | 486 | 4.1e-81 | 272.5 | Arginosuccinate synthase C-terminal domain |
XP_057782253.1 |
Pfam | PF00764 |
Arginosuc_synth | Domain | 98 | 260 | 2.3e-68 | 230.0 | Arginosuccinate synthase N-terminal HUP domain |
XP_057782253.1 |
Pfam | PF20979 |
Arginosuc_syn_C | Domain | 269 | 486 | 4.1e-81 | 272.5 | Arginosuccinate synthase C-terminal domain |
XP_057782254.1 |
Pfam | PF00764 |
Arginosuc_synth | Domain | 98 | 260 | 2.3e-68 | 230.0 | Arginosuccinate synthase N-terminal HUP domain |
XP_057782254.1 |
Pfam | PF20979 |
Arginosuc_syn_C | Domain | 269 | 486 | 4.1e-81 | 272.5 | Arginosuccinate synthase C-terminal domain |
XP_057782255.1 |
Pfam | PF00764 |
Arginosuc_synth | Domain | 98 | 260 | 2.3e-68 | 230.0 | Arginosuccinate synthase N-terminal HUP domain |
XP_057782255.1 |
Pfam | PF20979 |
Arginosuc_syn_C | Domain | 269 | 486 | 4.1e-81 | 272.5 | Arginosuccinate synthase C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
5 records
下载 cDNA FASTA5 records
下载 CDS FASTA5 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。