Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000814`

染色体: Chr08 坐标: 5989161-5991174 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000814`
名称	SmilChr08G000814
描述	pentatricopeptide repeat-containing protein At1g09410, mitochondrial-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	5989161 - 5991174 / `-`

ID 对照

NCBI Gene ID	`LOC131000396`
GeneID	`131000396`
locus_tag	`-`
NCBI Name	`LOC131000396`
原始查询	`SmilChr08G000814`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At1g09410, mitochondrial-like
产物	pentatricopeptide repeat-containing protein At1g09410%2C mitochondrial-like
Arabidopsis	`AT4G02750` (AT4G02750) Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:828187] identity=34.8; qcov=0.99; evalue=3.63e-102; confidence=low
Rice	`Os09g0327200` (P0706E03.7) - identity=36.6; qcov=0.885; evalue=6.66e-104; confidence=medium
GO	GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0009451 (RNA modification)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3)
InterPro	-
eggNOG	-
NR	GeneID:131000396

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057782258.1`
2	Nucleus	细胞核	0.00000	`XP_057782258.1`
3	Chromosome	染色体	0.00000	`XP_057782258.1`
4	Centromere	着丝粒	0.00000	`XP_057782258.1`
5	Chromatin	染色质	0.00000	`XP_057782258.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:5989658`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C6,C80
`Chr8:5989841`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C6,C80
`Chr8:5989946`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A1
`Chr8:5990096`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A1
`Chr8:5990104`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr8:5990150`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A18,B126,B33,B49,C2
`Chr8:5990380`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B7,B89,B91
`Chr8:5990495`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B114
`Chr8:5990599`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B35,B74
`Chr8:5990738`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C6,C80
`Chr8:5990804`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B2,B46
`Chr8:5990897`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B133

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782258.1

572 aa

286

572

PPR_1

PPR_2

PPR

PPR_3

PPR_2

PPR

PPR_2

PPR_3

PPR

PF12854 PPR_1 90-118 aa PF13041 PPR_2 91-122 aa PF01535 PPR 93-121 aa PF01535 PPR 124-151 aa PF01535 PPR 227-253 aa PF01535 PPR 256-285 aa PF13812 PPR_3 283-332 aa PF13041 PPR_2 284-332 aa PF01535 PPR 287-317 aa PF01535 PPR 360-386 aa PF13041 PPR_2 386-433 aa PF13812 PPR_3 386-433 aa PF01535 PPR 388-418 aa PF01535 PPR 424-450 aa PF01535 PPR 460-484 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782258.1`	Pfam	`PF12854`	PPR_1	Repeat	90	118	7.1e-41	138.4	PPR repeat
`XP_057782258.1`	Pfam	`PF13041`	PPR_2	Repeat	91	122	1.7e-67	224.1	PPR repeat family
`XP_057782258.1`	Pfam	`PF01535`	PPR	Repeat	93	121	8.3e-62	201.9	PPR repeat
`XP_057782258.1`	Pfam	`PF01535`	PPR	Repeat	124	151	8.3e-62	201.9	PPR repeat
`XP_057782258.1`	Pfam	`PF01535`	PPR	Repeat	227	253	8.3e-62	201.9	PPR repeat
`XP_057782258.1`	Pfam	`PF01535`	PPR	Repeat	256	285	8.3e-62	201.9	PPR repeat
`XP_057782258.1`	Pfam	`PF13812`	PPR_3	Repeat	283	332	9.6e-24	84.0	Pentatricopeptide repeat domain
`XP_057782258.1`	Pfam	`PF13041`	PPR_2	Repeat	284	332	1.7e-67	224.1	PPR repeat family
`XP_057782258.1`	Pfam	`PF01535`	PPR	Repeat	287	317	8.3e-62	201.9	PPR repeat
`XP_057782258.1`	Pfam	`PF01535`	PPR	Repeat	360	386	8.3e-62	201.9	PPR repeat
`XP_057782258.1`	Pfam	`PF13041`	PPR_2	Repeat	386	433	1.7e-67	224.1	PPR repeat family
`XP_057782258.1`	Pfam	`PF13812`	PPR_3	Repeat	386	433	9.6e-24	84.0	Pentatricopeptide repeat domain
`XP_057782258.1`	Pfam	`PF01535`	PPR	Repeat	388	418	8.3e-62	201.9	PPR repeat
`XP_057782258.1`	Pfam	`PF01535`	PPR	Repeat	424	450	8.3e-62	201.9	PPR repeat
`XP_057782258.1`	Pfam	`PF01535`	PPR	Repeat	460	484	8.3e-62	201.9	PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057926275.1
AACATCTCAAAACCACAATTAACAAGTTTTGAATGAAAACAAATTTTCAATTTTATCTTAGTTTGTTGAAAAATCTGTATATATATATAACAACACATTCAAAAAGCTTTGGCTCCAAAATCAGAGCTTCCTCTCTGATTTCAATGCGCCCACCAAAATCATTGGCCCCAATCTTCACCGCTGCTCGTTTCCACACCTACACATTCCCGACTGTTGATCTGAATCACAAGATCAACGAGTGCGTGCGCAGCGGAAATGTC...

CDS

1 records

下载 CDS FASTA

LOC131000396
ATGAAAACAAATTTTCAATTTTATCTTAGTTTGTTGAAAAATCTGTATATATATATAACAACACATTCAAAAAGCTTTGGCTCCAAAATCAGAGCTTCCTCTCTGATTTCAATGCGCCCACCAAAATCATTGGCCCCAATCTTCACCGCTGCTCGTTTCCACACCTACACATTCCCGACTGTTGATCTGAATCACAAGATCAACGAGTGCGTGCGCAGCGGAAATGTCAGCGGCGCACGCAAACTGTTCGACGATTATCC...

Protein

1 records

下载 Protein FASTA

XP_057782258.1
MKTNFQFYLSLLKNLYIYITTHSKSFGSKIRASSLISMRPPKSLAPIFTAARFHTYTFPTVDLNHKINECVRSGNVSGARKLFDDYPHSRNAVSWNSLINGCIKAGHFAEAQKLFDDMPHRDVVSWNTLLSGFRDAQSPEKARHHFLRMMGSDQRPDELTFAVLMSAFLNSEFDVLVLQLHGLVIRLGLDLNIYLGSALLRGYVGLGDRNGFCRVFDEIVVKDVVPCNVLILGYIEFGLMSEAKKAFDLMPKRNAFSWSI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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