Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000825`

染色体: Chr08 坐标: 6102917-6105899 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000825`
名称	SmilChr08G000825
描述	ADP-ribosylation factor 1
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	6102917 - 6105899 / `+`

ID 对照

NCBI Gene ID	`LOC131000410`
GeneID	`131000410`
locus_tag	`-`
NCBI Name	`LOC131000410`
原始查询	`SmilChr08G000825`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ADP-ribosylation factor 1
产物	ADP-ribosylation factor 1
Arabidopsis	`AT1G10630` (ARFA1F) ADP-ribosylation factor A1F [Source:NCBI gene (formerly Entrezgene);Acc:837606] identity=98.3; qcov=1; evalue=8.9e-134; confidence=high
Rice	`Os05g0489600` (ARF) - identity=98.3; qcov=1; evalue=4.76e-134; confidence=high
GO	GO:0003924 (GTPase activity); GO:0005525 (GTP binding); GO:0005737 (cytoplasm); GO:0006886 (intracellular protein transport); GO:0016192 (vesicle-mediated transport)
KEGG	smil04144 (Endocytosis - Salvia miltiorrhiza (redroot sage))
Pfam	PF00025 (Arf); PF00071 (Ras); PF01926 (MMR_HSR1); PF04670 (Gtr1_RagA); PF08477 (Roc); PF09439 (SRPRB)
InterPro	-
eggNOG	-
NR	GeneID:131000410

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057782279.1`
2	Trans-golgi network	Trans-golgi network	1.00000	`XP_057782280.1`
3	Vesicle	囊泡	1.00000	`XP_057782280.1`
4	Endosome	内体	1.00000	`XP_057782280.1`
5	Cytosol	细胞质基质	0.60000	`XP_057782280.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:6103942`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B62
`Chr8:6103990`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr8:6105459`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C28
`Chr8:6105474`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B25,B56,B96
`Chr8:6105534`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B101,B55,C21,C36
`Chr8:6105566`	`G`	`A`	EMS_canonical_SNV	stop_gained	5	A19,B130,B48,B67,C71
`Chr8:6105566`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A19,B130,B48,B67,C71
`Chr8:6105574`	`TA`	`T`	1bp_deletion	frameshift_variant	3	B104,D10,D11
`Chr8:6105574`	`TA`	`T`	1bp_deletion	CDS_variant	3	B104,D10,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782279.1

200 aa

100

200

Arf

SRPRB

MMR_HSR1

Roc

Gtr1_RagA

Ras

PF00025 Arf 5-177 aa PF09439 SRPRB 16-143 aa PF01926 MMR_HSR1 19-122 aa PF08477 Roc 19-129 aa PF04670 Gtr1_RagA 19-141 aa PF00071 Ras 19-173 aa

XP_057782280.1

181 aa

181

Arf

SRPRB

MMR_HSR1

Roc

Gtr1_RagA

Ras

PF00025 Arf 5-177 aa PF09439 SRPRB 16-143 aa PF01926 MMR_HSR1 19-122 aa PF08477 Roc 19-129 aa PF04670 Gtr1_RagA 19-141 aa PF00071 Ras 19-173 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782279.1`	Pfam	`PF00025`	Arf	Domain	5	177	1.7e-81	272.5	ADP-ribosylation factor family
`XP_057782279.1`	Pfam	`PF09439`	SRPRB	Domain	16	143	5.7e-13	49.3	Signal recognition particle receptor beta subunit
`XP_057782279.1`	Pfam	`PF01926`	MMR_HSR1	Family	19	122	8e-05	23.4	50S ribosome-binding GTPase
`XP_057782279.1`	Pfam	`PF08477`	Roc	Domain	19	129	8.4e-14	52.6	Ras of Complex, Roc, domain of DAPkinase
`XP_057782279.1`	Pfam	`PF04670`	Gtr1_RagA	Domain	19	141	2e-09	37.9	Gtr1/RagA G protein conserved region
`XP_057782279.1`	Pfam	`PF00071`	Ras	Domain	19	173	7e-12	45.9	Ras family
`XP_057782280.1`	Pfam	`PF00025`	Arf	Domain	5	177	1.2e-81	273.0	ADP-ribosylation factor family
`XP_057782280.1`	Pfam	`PF09439`	SRPRB	Domain	16	143	4.4e-13	49.7	Signal recognition particle receptor beta subunit
`XP_057782280.1`	Pfam	`PF01926`	MMR_HSR1	Family	19	122	6.6e-05	23.7	50S ribosome-binding GTPase
`XP_057782280.1`	Pfam	`PF08477`	Roc	Domain	19	129	7.1e-14	52.8	Ras of Complex, Roc, domain of DAPkinase
`XP_057782280.1`	Pfam	`PF04670`	Gtr1_RagA	Domain	19	141	1.6e-09	38.3	Gtr1/RagA G protein conserved region
`XP_057782280.1`	Pfam	`PF00071`	Ras	Domain	19	173	5.3e-12	46.3	Ras family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057926297.1
GACATTAGTGGCTCGATATCAAGCTCGAATTTGCTCACTGTGAAAATACGCAAATTAAATTATAAATTGAACATAAGAAAACGAAAATAGGAGTAATAAAAGAATATTAGCAGCAGCTAAAATGCAAAAACAAATTAATCAATTTTGGTGAAAAATAGTTACCGTATTTTTTTTTCTATTAAAAGAAAAAGAAAAGGAAATGCGCACCACAATAAAACATCGCACTGCTCAGATATTACGCTAGCACACGACTCATCGTT...

XM_057926296.1
TACCGTATTTTTTTTTCTATTAAAAGAAAAAGAAAAGGAAATGCGCACCACAATAAAACATCGCACTGCTCAGATATTACGCTAGCACACGACTCATCGTTCGTTTGGAGAGATCTCTAAACCCCGGCACGGTCCATCCTCGCTGCTCCTCTTCCATTTAAAAGATGGGGCTGTCTTTCACGAAGCTTTTCAGTCGGCTGTTTGCCAAGAAAGAGATGCGTATACTCATGGTAGGTCTCGATGCCGCTGGTAAAACAACC...

CDS

2 records

下载 CDS FASTA

LOC131000410
ATGGGGCTGTCTTTCACGAAGCTTTTCAGTCGGCTGTTTGCCAAGAAAGAGATGCGTATACTCATGGTAGGTCTCGATGCCGCTGGTAAAACAACCATTCTCTACAAGCTCAAACTTGGAGAAATTGTCACCACAATTCCTACCATCGGGTTCAATGTGGAGACTGTGGAATATAAGAACATTAGCTTCACTGTTTGGGATGTCGGTGGCCAGGACAAGATCCGTCCATTATGGAGGCATTATTTCCAGAACACCCAAGG...

Protein

2 records

下载 Protein FASTA

XP_057782279.1
MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKVRVATIAKNNKIYSSYHWIP

XP_057782280.1
MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKS

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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