Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G000838

染色体: Chr08 坐标: 6200734-6205077 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G000838
名称SmilChr08G000838
描述magnesium/proton exchanger-like
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向6200734 - 6205077 / -

ID 对照

NCBI Gene IDLOC131000420
GeneID131000420
locus_tag-
NCBI NameLOC131000420
原始查询SmilChr08G000838

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述magnesium/proton exchanger-like
产物magnesium/proton exchanger-like
ArabidopsisAT2G47600 (MHX)
magnesium/proton exchanger [Source:NCBI gene (formerly Entrezgene);Acc:819373]
identity=66.2; qcov=1.06; evalue=0; confidence=high
RiceOs11g0660000 (OsMHX)
-
identity=66.6; qcov=1.03; evalue=0; confidence=high
GOGO:0016020 (membrane); GO:0030001 (metal ion transport); GO:0055085 (transmembrane transport)
KEGG-
PfamPF01699 (Na_Ca_ex)
InterPro-
eggNOG-
NRGeneID:131000420

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Vacuole membrane 液泡膜 0.60000 XP_057782302.1
2 Cell membrane 细胞膜 0.40000 XP_057782302.1
3 Vacuole 液泡 0.40000 XP_057782302.1
4 Cytoplasmic vesicle 细胞质囊泡 0.20000 XP_057782302.1
5 Secretory vesicle Secretory vesicle 0.20000 XP_057782302.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:6200894 C T EMS_canonical_SNV CDS_variant 3 B2,B29,B61
Chr8:6200949 C T EMS_canonical_SNV CDS_variant 1 D10
Chr8:6201356 C T EMS_canonical_SNV CDS_variant 1 A20
Chr8:6201611 C T EMS_canonical_SNV CDS_variant 2 B97,C10
Chr8:6202623 G A EMS_canonical_SNV CDS_variant 2 C85,D10
Chr8:6202994 C T EMS_canonical_SNV CDS_variant 1 A15
Chr8:6203726 G A EMS_canonical_SNV CDS_variant 5 B112,B132,C18,C43,C44
Chr8:6203764 G A EMS_canonical_SNV CDS_variant 1 B5
Chr8:6203776 C T EMS_canonical_SNV CDS_variant 1 D10
Chr8:6203789 C T EMS_canonical_SNV CDS_variant 5 B109,B122,B24,B25,C8
Chr8:6203831 C T EMS_canonical_SNV CDS_variant 5 B112,B132,C18,C43,C44

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057782302.1
510 aa
N
1
255
510
Na_Ca_ex
Na_Ca_ex
C
PF01699 Na_Ca_ex 46-217 aa PF01699 Na_Ca_ex 339-502 aa
XP_057782303.1
510 aa
N
1
255
510
Na_Ca_ex
Na_Ca_ex
C
PF01699 Na_Ca_ex 46-217 aa PF01699 Na_Ca_ex 339-502 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057782302.1 Pfam PF01699 Na_Ca_ex Family 46 217 2.5e-40 138.6 Sodium/calcium exchanger protein
XP_057782302.1 Pfam PF01699 Na_Ca_ex Family 339 502 2.5e-40 138.6 Sodium/calcium exchanger protein
XP_057782303.1 Pfam PF01699 Na_Ca_ex Family 46 217 2.5e-40 138.6 Sodium/calcium exchanger protein
XP_057782303.1 Pfam PF01699 Na_Ca_ex Family 339 502 2.5e-40 138.6 Sodium/calcium exchanger protein

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057926320.1
AGATAATACAAATCACAATATAATATCTTTTCTCTCTCATTTGGAAATTTTGCCAATATATTCATAATGATTTAAATTTATTGAAAACAAAGTAGATTAAATTTTTTGGAGGGGTTGAAATTATACTGCATTAACTGACATGTTCGGACCTCATCATCACTCTTCAGAATACGACAGCTGAGAGAGATTTATAGTAAGGTCGGAACCATACAAATCACGTTTGCTGACGAAATCTCCCGTTCGGTGGAGGAAAAGGTAAC...
XM_057926319.1
TTTGGAGGGGTTGAAATTATACTGCATTAACTGACATGTTCGGACCTCATCATCACTCTTCAGAATACGACAGCTGAGAGAGATTTATAGTAAGGTCGGAACCATACAAATCACGTTTGCTGACGAAATCTCCCGTTCGGTGGAGGAAAAGGTAACACAATTCAATCAACGCAAACCAAATTGATCCGTTTTTGCTGCAAAGATGATGTTGAGAATGTGAAGAGTCAATAGCGGTGCTGATTTTTCTCCGTTCCGGTGGA...

CDS

2 records

下载 CDS FASTA
LOC131000420
ATGAGCCTTCTTGTTAATGACACCATTGGACACATAGCTGGAGTTTCCAATACCTTTGGGGTTGAGAAATGCCAACTTTACTTTCTTTTCCATGGTGAAACTAAGCTTGGTAATGGTGTTAGGGGGTTCCTGTATTTTACGGCTCTTGCCTACTGCTTTATTGGATTGTCAGCTATAACCGCTCGTTTCTTCCGGTCTATGGAGCATGTTGTTAAGCATACTCGGATAGTCGAAGAGATTGATCCTTTCACTAATACCAT...
LOC131000420
ATGAGCCTTCTTGTTAATGACACCATTGGACACATAGCTGGAGTTTCCAATACCTTTGGGGTTGAGAAATGCCAACTTTACTTTCTTTTCCATGGTGAAACTAAGCTTGGTAATGGTGTTAGGGGGTTCCTGTATTTTACGGCTCTTGCCTACTGCTTTATTGGATTGTCAGCTATAACCGCTCGTTTCTTCCGGTCTATGGAGCATGTTGTTAAGCATACTCGGATAGTCGAAGAGATTGATCCTTTCACTAATACCAT...

Protein

2 records

下载 Protein FASTA
XP_057782302.1
MSLLVNDTIGHIAGVSNTFGVEKCQLYFLFHGETKLGNGVRGFLYFTALAYCFIGLSAITARFFRSMEHVVKHTRIVEEIDPFTNTIVVKHKKVWNYTIADITLLAFGTSFPQISLATIDAIRNIGQVYAGGLGPGTLVGSAAFDLFPIHAVCVIVPKAGELKKISDIGVWLVELFWSFWAYIWLYITLEVWTPNVITLWEALLTVLQFGLLLLHAYAQDMRWPYLSLPIARSKRPEEWVPVETAPCRNGNTAYDEYQKL...
XP_057782303.1
MSLLVNDTIGHIAGVSNTFGVEKCQLYFLFHGETKLGNGVRGFLYFTALAYCFIGLSAITARFFRSMEHVVKHTRIVEEIDPFTNTIVVKHKKVWNYTIADITLLAFGTSFPQISLATIDAIRNIGQVYAGGLGPGTLVGSAAFDLFPIHAVCVIVPKAGELKKISDIGVWLVELFWSFWAYIWLYITLEVWTPNVITLWEALLTVLQFGLLLLHAYAQDMRWPYLSLPIARSKRPEEWVPVETAPCRNGNTAYDEYQKL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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