当前解析结果
SmilChr08G000838| 统一新 Gene ID | SmilChr08G000838 |
|---|---|
| 名称 | SmilChr08G000838 |
| 描述 | magnesium/proton exchanger-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 6200734 - 6205077 / - |
| NCBI Gene ID | LOC131000420 |
|---|---|
| GeneID | 131000420 |
| locus_tag | - |
| NCBI Name | LOC131000420 |
| 原始查询 | SmilChr08G000838 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | magnesium/proton exchanger-like |
| 产物 | magnesium/proton exchanger-like |
| Arabidopsis | AT2G47600 (MHX)magnesium/proton exchanger [Source:NCBI gene (formerly Entrezgene);Acc:819373] identity=66.2; qcov=1.06; evalue=0; confidence=high |
| Rice | Os11g0660000 (OsMHX)- identity=66.6; qcov=1.03; evalue=0; confidence=high |
| GO | GO:0016020 (membrane); GO:0030001 (metal ion transport); GO:0055085 (transmembrane transport) |
| KEGG | - |
| Pfam | PF01699 (Na_Ca_ex) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000420 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole membrane | 液泡膜 | 0.60000 | XP_057782302.1 |
| 2 | Cell membrane | 细胞膜 | 0.40000 | XP_057782302.1 |
| 3 | Vacuole | 液泡 | 0.40000 | XP_057782302.1 |
| 4 | Cytoplasmic vesicle | 细胞质囊泡 | 0.20000 | XP_057782302.1 |
| 5 | Secretory vesicle | Secretory vesicle | 0.20000 | XP_057782302.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:6200894 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B2,B29,B61 |
Chr8:6200949 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr8:6201356 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A20 |
Chr8:6201611 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B97,C10 |
Chr8:6202623 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C85,D10 |
Chr8:6202994 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A15 |
Chr8:6203726 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B112,B132,C18,C43,C44 |
Chr8:6203764 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B5 |
Chr8:6203776 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr8:6203789 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B109,B122,B24,B25,C8 |
Chr8:6203831 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B112,B132,C18,C43,C44 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057782302.1PF01699
Na_Ca_ex 46-217 aa
PF01699
Na_Ca_ex 339-502 aa
XP_057782303.1PF01699
Na_Ca_ex 46-217 aa
PF01699
Na_Ca_ex 339-502 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057782302.1 |
Pfam | PF01699 |
Na_Ca_ex | Family | 46 | 217 | 2.5e-40 | 138.6 | Sodium/calcium exchanger protein |
XP_057782302.1 |
Pfam | PF01699 |
Na_Ca_ex | Family | 339 | 502 | 2.5e-40 | 138.6 | Sodium/calcium exchanger protein |
XP_057782303.1 |
Pfam | PF01699 |
Na_Ca_ex | Family | 46 | 217 | 2.5e-40 | 138.6 | Sodium/calcium exchanger protein |
XP_057782303.1 |
Pfam | PF01699 |
Na_Ca_ex | Family | 339 | 502 | 2.5e-40 | 138.6 | Sodium/calcium exchanger protein |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。