当前解析结果
SmilChr08G000841| 统一新 Gene ID | SmilChr08G000841 |
|---|---|
| 名称 | SmilChr08G000841 |
| 描述 | caffeoylshikimate esterase-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 6223643 - 6227591 / + |
| NCBI Gene ID | LOC131000427 |
|---|---|
| GeneID | 131000427 |
| locus_tag | - |
| NCBI Name | LOC131000427 |
| 原始查询 | SmilChr08G000841 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | caffeoylshikimate esterase-like |
| 产物 | caffeoylshikimate esterase-like |
| Arabidopsis | AT3G62860 (AT3G62860)alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:825461] identity=69.2; qcov=1.02; evalue=3.87e-176; confidence=high |
| Rice | Os05g0363100- identity=67.3; qcov=0.994; evalue=3.03e-170; confidence=high |
| GO | GO:0016020 (membrane); GO:0016298 (lipase activity) |
| KEGG | smil00940 (Phenylpropanoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00561 (Abhydrolase_1); PF12146 (Hydrolase_4); PF12697 (Abhydrolase_6); PF20408 (Abhydrolase_11) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000427 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Lipid droplet | 脂滴 | 0.80000 | XP_057782312.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.60000 | XP_057782312.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057782312.1 |
| 4 | Endosome | 内体 | 0.20000 | XP_057782312.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057782312.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:6224349 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B13,D7 |
Chr8:6226129 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B101 |
Chr8:6226443 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C32,C62,C68 |
Chr8:6226502 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | D1 |
Chr8:6226502 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D1 |
Chr8:6226721 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr8:6226894 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B12,C57,C81,C85 |
Chr8:6227151 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:6227154 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B13,D7 |
Chr8:6227342 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C32,C62,C68 |
Chr8:6227359 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C32,C62,C68 |
Chr8:6227421 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057782312.1PF12146
Hydrolase_4 28-270 aa
PF20408
Abhydrolase_11 30-125 aa
PF00561
Abhydrolase_1 32-225 aa
PF12697
Abhydrolase_6 33-270 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057782312.1 |
Pfam | PF12146 |
Hydrolase_4 | Domain | 28 | 270 | 5.1e-67 | 226.4 | Serine aminopeptidase, S33 |
XP_057782312.1 |
Pfam | PF20408 |
Abhydrolase_11 | Domain | 30 | 125 | 7.9e-08 | 33.0 | Alpha/beta hydrolase domain |
XP_057782312.1 |
Pfam | PF00561 |
Abhydrolase_1 | Domain | 32 | 225 | 5e-14 | 53.3 | alpha/beta hydrolase fold |
XP_057782312.1 |
Pfam | PF12697 |
Abhydrolase_6 | Domain | 33 | 270 | 2.4e-10 | 42.1 | Alpha/beta hydrolase family |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。