当前解析结果
SmilChr08G000848| 统一新 Gene ID | SmilChr08G000848 |
|---|---|
| 名称 | SmilChr08G000848 |
| 描述 | uncharacterized SmilChr08G000848 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 6285638 - 6288237 / - |
| NCBI Gene ID | LOC131000429 |
|---|---|
| GeneID | 131000429 |
| locus_tag | - |
| NCBI Name | LOC131000429 |
| 原始查询 | SmilChr08G000848 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | LYR motif protein [Source:NCBI gene (formerly Entrezgene);Acc:828030]; symbol=AT4G02425; hit=AT4G02425; species=arabidopsis; confidence=medium |
| 产物 | LYR motif protein [Source:NCBI gene (formerly Entrezgene);Acc:828030]; symbol=AT4G02425; hit=AT4G02425; species=arabidopsis; confidence=medium |
| Arabidopsis | AT4G02425 (AT4G02425)LYR motif protein [Source:NCBI gene (formerly Entrezgene);Acc:828030] identity=49.8; qcov=1.08; evalue=6.39e-47; confidence=medium |
| Rice | Os01g0316500- identity=34.5; qcov=0.925; evalue=5.17e-16; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000429 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057782314.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057782314.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057782314.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057782314.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057782314.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:6286049 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B108,B113,D11 |
Chr8:6287560 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B13,B4,D4 |
Chr8:6287644 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr8:6287690 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | B29 |
Chr8:6287690 |
AC |
A |
1bp_deletion | CDS_variant | 1 | B29 |
Chr8:6287770 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | B92 |
Chr8:6287770 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B92 |
Chr8:6287783 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B138 |
Chr8:6287788 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B36 |
Chr8:6287812 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D8 |
Chr8:6287989 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B29,B61 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。