当前解析结果
SmilChr08G000858| 统一新 Gene ID | SmilChr08G000858 |
|---|---|
| 名称 | SmilChr08G000858 |
| 描述 | ABC transporter C family member 4 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 6351832 - 6359000 / - |
| NCBI Gene ID | LOC131000444 |
|---|---|
| GeneID | 131000444 |
| locus_tag | - |
| NCBI Name | LOC131000444 |
| 原始查询 | SmilChr08G000858 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ABC transporter C family member 4 |
| 产物 | ABC transporter C family member 4 |
| Arabidopsis | AT2G47800 (ABCC4)multidrug resistance-associated protein 4 [Source:NCBI gene (formerly Entrezgene);Acc:819392] identity=68.7; qcov=1.01; evalue=0; confidence=high |
| Rice | Os01g0356400 (OsABCC8)- identity=60; qcov=1.01; evalue=0; confidence=high |
| GO | GO:0000325 (plant-type vacuole); GO:0005524 (ATP binding); GO:0005774 (vacuolar membrane); GO:0016887 (ATP hydrolysis activity); GO:0055085 (transmembrane transport); GO:0140359 (ABC-type transporter activity) |
| KEGG | - |
| Pfam | PF00005 (ABC_tran); PF00664 (ABC_membrane) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000444 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 1.00000 | XP_057782335.1 |
| 2 | Vacuole membrane | 液泡膜 | 1.00000 | XP_057782335.1 |
| 3 | Cell membrane | 细胞膜 | 0.20000 | XP_057782335.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057782335.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057782335.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:6352208 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A2,B25 |
Chr8:6352219 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C32,C68 |
Chr8:6352262 |
AGC |
A |
2bp_deletion | frameshift_variant | 1 | D1 |
Chr8:6352262 |
AGC |
A |
2bp_deletion | CDS_variant | 1 | D1 |
Chr8:6352456 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A8,B138,C1,C16,C40 |
Chr8:6352557 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C65 |
Chr8:6352603 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A24,B62,C46 |
Chr8:6352740 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B33,B76,C80 |
Chr8:6352902 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B25 |
Chr8:6352983 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B127,D11 |
Chr8:6353120 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
Chr8:6353359 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B2,B37,C60,C74 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057782335.1PF00664
ABC_membrane 330-593 aa
PF00005
ABC_tran 658-791 aa
PF00664
ABC_membrane 947-1189 aa
PF00005
ABC_tran 1278-1426 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057782335.1 |
Pfam | PF00664 |
ABC_membrane | Family | 330 | 593 | 1.6e-54 | 186.1 | ABC transporter transmembrane region |
XP_057782335.1 |
Pfam | PF00005 |
ABC_tran | Domain | 658 | 791 | 5.6e-49 | 167.0 | ABC transporter |
XP_057782335.1 |
Pfam | PF00664 |
ABC_membrane | Family | 947 | 1189 | 1.6e-54 | 186.1 | ABC transporter transmembrane region |
XP_057782335.1 |
Pfam | PF00005 |
ABC_tran | Domain | 1278 | 1426 | 5.6e-49 | 167.0 | ABC transporter |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。