当前解析结果
SmilChr08G000884| 统一新 Gene ID | SmilChr08G000884 |
|---|---|
| 名称 | SmilChr08G000884 |
| 描述 | uncharacterized SmilChr08G000884 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 6539484 - 6541160 / + |
| NCBI Gene ID | LOC130997994 |
|---|---|
| GeneID | 130997994 |
| locus_tag | - |
| NCBI Name | LOC130997994 |
| 原始查询 | SmilChr08G000884 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0704400; species=rice; confidence=low |
| 产物 | hit=Os06g0704400; species=rice; confidence=low |
| Arabidopsis | AT1G06740 (MUG3)MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3766669] identity=22.3; qcov=0.763; evalue=8.25e-23; confidence=weak |
| Rice | Os06g0704400- identity=33.9; qcov=0.755; evalue=2.67e-65; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF00872 (Transposase_mut); PF04434 (SWIM); PF10551 (MULE) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997994 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057779416.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057779416.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057779416.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057779416.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057779416.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:6539526 |
TC |
T |
1bp_deletion | frameshift_variant | 32 | A10,A20,B105,B108,B11,B121,B129,B133,B135,B16,B37,B67,B69,B72,B79,B8,B83,C2,C3,C32,C35,C42,C47,C51,C54,C58,C59,C68,C70,C84,D10,D9 |
Chr8:6539538 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B68 |
Chr8:6539538 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B68 |
Chr8:6539539 |
G |
A |
EMS_canonical_SNV | stop_gained | 3 | B131,C38,C82 |
Chr8:6539539 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B131,C38,C82 |
Chr8:6539541 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B54,B99,C65,C7,C79 |
Chr8:6539577 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | A3,C86 |
Chr8:6539577 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A3,C86 |
Chr8:6539593 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr8:6539600 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B62,B90,B92,C2,C87 |
Chr8:6539635 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B6 |
Chr8:6539750 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A4,B138,B18,B73,B97 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057779416.1PF10551
MULE 2-69 aa
PF00872
Transposase_mut 10-116 aa
PF04434
SWIM 244-272 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779416.1 |
Pfam | PF10551 |
MULE | Domain | 2 | 69 | 9.8e-09 | 36.2 | MULE transposase domain |
XP_057779416.1 |
Pfam | PF00872 |
Transposase_mut | Family | 10 | 116 | 2.3e-05 | 24.2 | Transposase, Mutator family |
XP_057779416.1 |
Pfam | PF04434 |
SWIM | Domain | 244 | 272 | 8.5e-09 | 35.5 | SWIM zinc finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。