Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000886`

染色体: Chr08 坐标: 6565655-6568215 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000886`
名称	SmilChr08G000886
描述	zinc finger protein GAI-ASSOCIATED FACTOR 1-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	6565655 - 6568215 / `+`

ID 对照

NCBI Gene ID	`LOC131000473`
GeneID	`131000473`
locus_tag	`-`
NCBI Name	`LOC131000473`
原始查询	`SmilChr08G000886`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	zinc finger protein GAI-ASSOCIATED FACTOR 1-like
产物	zinc finger protein GAI-ASSOCIATED FACTOR 1-like
Arabidopsis	`AT3G50700` (IDD2) indeterminate(ID)-domain 2 [Source:NCBI gene (formerly Entrezgene);Acc:824234] identity=54.3; qcov=0.671; evalue=8.97e-114; confidence=high
Rice	`Os01g0242200` (OsIDD8) - identity=52.8; qcov=0.701; evalue=1.03e-113; confidence=high
GO	GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus)
KEGG	-
Pfam	PF00096 (zf-C2H2); PF22992 (C2CH-4th_BIRD-IDD); PF22995 (C2CH-3rd_BIRD-IDD); PF22996 (C2H2-2nd_BIRD-IDD)
InterPro	-
eggNOG	-
NR	GeneID:131000473

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057782375.1`
2	Chromosome	染色体	0.00000	`XP_057782375.1`
3	Centromere	着丝粒	0.00000	`XP_057782375.1`
4	Chromatin	染色质	0.00000	`XP_057782375.1`
5	Telomere	端粒	0.00000	`XP_057782375.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:6566016`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B103,B132,D2
`Chr8:6566405`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C36
`Chr8:6566659`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B26,C19
`Chr8:6567167`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B138,B19,C65
`Chr8:6567180`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B31,C56
`Chr8:6567253`	`CG`	`C`	1bp_deletion	frameshift_variant	39	A20,A24,A25,A7,B112,B124,B127,B130,B39,B4,B42,B43,B46,B54,B60,B70,B75,B78,B8,B80,B86,B99,C18,C27,C34,C46,C47,C48,C49,C54,C57,C58,C70,C72,C74,C84,D3,D5,D6
`Chr8:6567401`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B42,B43
`Chr8:6567410`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C22
`Chr8:6567416`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:6567530`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:6567562`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B28
`Chr8:6567562`	`TG`	`T`	1bp_deletion	CDS_variant	1	B28

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782375.1

489 aa

244

489

zf-C2H2

C2H2-2nd_BIRD-IDD

C2CH-3rd_BIRD-IDD

C2CH-4th_BIRD-IDD

PF00096 zf-C2H2 79-101 aa PF22996 C2H2-2nd_BIRD-IDD 116-150 aa PF22995 C2CH-3rd_BIRD-IDD 154-178 aa PF22992 C2CH-4th_BIRD-IDD 181-218 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782375.1`	Pfam	`PF00096`	zf-C2H2	Domain	79	101	1.1e-07	32.6	Zinc finger, C2H2 type
`XP_057782375.1`	Pfam	`PF22996`	C2H2-2nd_BIRD-IDD	Family	116	150	2.8e-22	79.1	BIRD-IDD transcription factor, second C2H2 zinc finger
`XP_057782375.1`	Pfam	`PF22995`	C2CH-3rd_BIRD-IDD	Domain	154	178	4.4e-14	52.6	BIRD-IDD transcription factor, third C2HC zinc finger
`XP_057782375.1`	Pfam	`PF22992`	C2CH-4th_BIRD-IDD	Domain	181	218	5.2e-25	87.8	BIRD-IDD transcription factor, fourth C2HC zinc finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057926392.1
GAAAGTTAGGGGGGATTTCCCTATCAGCTGTCTCTTATCACTTAGTATATATATATAGCAAATAAGCCAAAGGAGACCAAATACATATGTTCATAACAAAGCTCTTCCATCCCAGCTGCCCTTTTGTCCTCCTCCACCTAAACTCATTCCCATCTCCACCAAAAAAACAAACAAACAAATTCTAATTTTAATTTATTTTCTACCATAAACACAATATTTGTAATGTCAAACATCACAGGTGATGAAGGGAGCTTCTCTTC...

CDS

1 records

下载 CDS FASTA

LOC131000473
ATGTCAAACATCACAGGTGATGAAGGGAGCTTCTCTTCTGGAGAAGTCCAACAGCAGCAAGAGAAGCAGTCCAACGCCGCCGCCGCCGCCGCCTCCACTACCAGTAATGGCTCCTCCGGCTCTCACAAGCAGCTCCAGCCTGCACCTAAGAAGAAGAGAAATCTTCCAGGAACTCCAGATCCGACGGCGGAAGTGGTGGCGCTGTCTCCGACGACGCTGATGGCGACGAACCGGTTCGTGTGCGAAATCTGCAACAAAGG...

Protein

1 records

下载 Protein FASTA

XP_057782375.1
MSNITGDEGSFSSGEVQQQQEKQSNAAAAAASTTSNGSSGSHKQLQPAPKKKRNLPGTPDPTAEVVALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTTTEVKKRVYICPEPTCVHHNPGRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNKVNQGIMGSLGPNLSAQLPDLMSTMPISSNTNTNTSMAMSGFSNPLKSL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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