Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G000887

染色体: Chr08 坐标: 6569728-6574513 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G000887
名称SmilChr08G000887
描述metal tolerance protein C1
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向6569728 - 6574513 / -

ID 对照

NCBI Gene IDLOC131000474
GeneID131000474
locus_tag-
NCBI NameLOC131000474
原始查询SmilChr08G000887

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述metal tolerance protein C1
产物metal tolerance protein C1
ArabidopsisAT2G47830 (AT2G47830)
Cation efflux family protein [Source:NCBI gene (formerly Entrezgene);Acc:819395]
identity=61.2; qcov=0.973; evalue=5.59e-148; confidence=high
RiceOs03g0346800 (OsMTP6)
-
identity=61.1; qcov=0.956; evalue=5.17e-135; confidence=high
GOGO:0006812 (monoatomic cation transport); GO:0008324 (monoatomic cation transmembrane transporter activity); GO:0016020 (membrane); GO:0055085 (transmembrane transport)
KEGG-
PfamPF01545 (Cation_efflux); PF16916 (ZT_dimer)
InterPro-
eggNOG-
NRGeneID:131000474

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057782376.1
2 Mitochondrion membrane 线粒体膜 1.00000 XP_057782376.1
3 Mitochondrion inner membrane 线粒体内膜 1.00000 XP_057782377.1
4 Endoplasmic reticulum 内质网 0.60000 XP_057782378.1
5 Golgi apparatus 高尔基体 0.40000 XP_057782378.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:6570190 C T EMS_canonical_SNV CDS_variant 2 C46,D11
Chr8:6572635 G A EMS_canonical_SNV CDS_variant 1 A24
Chr8:6572792 G A EMS_canonical_SNV CDS_variant 1 A24
Chr8:6573305 C T EMS_canonical_SNV CDS_variant 1 A24
Chr8:6573942 G A EMS_canonical_SNV CDS_variant 1 A24
Chr8:6574041 G A EMS_canonical_SNV CDS_variant 1 A24

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057782376.1
503 aa
N
1
252
503
Cation_efflux
ZT_dimer
C
PF01545 Cation_efflux 87-306 aa PF16916 ZT_dimer 312-387 aa
XP_057782377.1
475 aa
N
1
238
475
Cation_efflux
ZT_dimer
C
PF01545 Cation_efflux 87-268 aa PF16916 ZT_dimer 284-359 aa
XP_057782378.1
366 aa
N
1
183
366
Cation_efflux
ZT_dimer
C
PF01545 Cation_efflux 9-169 aa PF16916 ZT_dimer 175-250 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057782376.1 Pfam PF01545 Cation_efflux Domain 87 306 2.8e-42 145.5 Cation efflux transmembrane domain
XP_057782376.1 Pfam PF16916 ZT_dimer Domain 312 387 8.9e-26 90.4 Cation efflux protein, cytoplasmic domain
XP_057782377.1 Pfam PF01545 Cation_efflux Domain 87 268 1.1e-34 120.7 Cation efflux transmembrane domain
XP_057782377.1 Pfam PF16916 ZT_dimer Domain 284 359 7.5e-26 90.7 Cation efflux protein, cytoplasmic domain
XP_057782378.1 Pfam PF01545 Cation_efflux Domain 9 169 1.6e-20 74.5 Cation efflux transmembrane domain
XP_057782378.1 Pfam PF16916 ZT_dimer Domain 175 250 3.6e-26 91.7 Cation efflux protein, cytoplasmic domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057926393.1
GTGAGTGATAAAATTCCATCAAAATATTTTAGGGTTCGAATTACTCATGACAATATATGAAGAAGAGATGAAGGCGGTGGTTTGTGTTGGATTAAGATTTGGTGCGTAGCATTCGTGAAAAGAAAAGGAAAGAGATTCGATACGTGCATGTCACCAAATCGAAAATACATATGTCAACTTAATTTTCTATTAATTTCCCAATCTAATCTAGAATAACAGAAATATGAACTCGCTTATATTCGACGCTTGAAGCCGGTCTT...
XM_057926394.1
ACAATATATGAAGAAGAGATGAAGGCGGTGGTTTGTGTTGGATTAAGATTTGGTGCGTAGCATTCGTGAAAAGAAAAGGAAAGAGATTCGATACGTGCATGTCACCAAATCGAAAATACATATGTCAACTTAATTTTCTATTAATTTCCCAATCTAATCTAGAATAACAGAAATATGAACTCGCTTATATTCGACGCTTGAAGCCGGTCTTCAATTTCTCTTGGCCGTCTAATTGTTTGATGAAATGGGTTTTCGATTCT...

CDS

3 records

下载 CDS FASTA
LOC131000474
ATGGGTTTTCGATTCTTAAAAACTCTGCACCCTGCTTCCAAATCATGCATCTCGAGACTCAAATCATCTCAGCTTTGCAACTCCGAGATTTTCAGAAACTCTTGTGCTGCTGCGAATTCTGAATTTTATGATCGCTCAACCTTTTATTCTGAAAACCCAAATCTCAAGATTTTCCGGCGCTGGCATGGAGGCCACTCACACCACCACCACGATCGCCGGGATTCTCATTCCGGAAAAGAGGGCGAGAAAATTTTCCGGCT...
LOC131000474
ATGGGTTTTCGATTCTTAAAAACTCTGCACCCTGCTTCCAAATCATGCATCTCGAGACTCAAATCATCTCAGCTTTGCAACTCCGAGATTTTCAGAAACTCTTGTGCTGCTGCGAATTCTGAATTTTATGATCGCTCAACCTTTTATTCTGAAAACCCAAATCTCAAGATTTTCCGGCGCTGGCATGGAGGCCACTCACACCACCACCACGATCGCCGGGATTCTCATTCCGGAAAAGAGGGCGAGAAAATTTTCCGGCT...

Protein

3 records

下载 Protein FASTA
XP_057782376.1
MGFRFLKTLHPASKSCISRLKSSQLCNSEIFRNSCAAANSEFYDRSTFYSENPNLKIFRRWHGGHSHHHHDRRDSHSGKEGEKIFRLGLAADIGLAAGKAFTGYVSGSTAIIADAAHSISDVVLSGVALFSFRAGRAPKDKEHPYGHGKFETLGALGISSVLLLTAGGIAWHAIDVLAVVWSAAPEIINQSLAHNHAHGHQLGGHQHGIDMEHPILALNMTIVSIGVKEGLYWVTKKAGEKTGSGLMKANAWHHRADAIS...
XP_057782377.1
MGFRFLKTLHPASKSCISRLKSSQLCNSEIFRNSCAAANSEFYDRSTFYSENPNLKIFRRWHGGHSHHHHDRRDSHSGKEGEKIFRLGLAADIGLAAGKAFTGYVSGSTAIIADAAHSISDVVLSGVALFSFRAGRAPKDKEHPYGHGKFETLGALGISSVLLLTAGGIAWHAIDVLAVVWSAAPEIINQSLAHNHAHGHQLGGHQHGIDMEHPILALNMTIVSIGVKEGLYWVTKKAGEKTGSGLMKANAWHHRADAIS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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