Red Sage Omics 丹参基因组信息平台
首页 基因查询 ID 对照表 功能注释 结构域预测 Pfam 基因组工具 蛋白互作 亚细胞定位 表达量 共表达 同源/共线性 GO/KEGG 注释 TF 结合位点 TF 靶基因 EMS 突变 JBrowse BLAST 下载 关于 帮助
数据资源
ID 对照表 功能注释 功能检索 次生代谢专题 文献证据 结构域预测 Pfam 同源/共线性
分析工具
基因组工具 引物设计 同源重组引物设计 核酸翻译 BLAST 蛋白互作 亚细胞定位 共表达 GO/KEGG 注释 功能检索
调控/突变
TF 结合位点 TF 靶基因 EMS 突变
帮助
关于 帮助 资源与版本
中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G000899

染色体: Chr08 坐标: 6668735-6672694 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G000899
名称SmilChr08G000899
描述zinc finger CCCH domain-containing protein 32
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向6668735 - 6672694 / +

ID 对照

NCBI Gene IDLOC131000488
GeneID131000488
locus_tag-
NCBI NameLOC131000488
原始查询SmilChr08G000899

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述zinc finger CCCH domain-containing protein 32
产物zinc finger CCCH domain-containing protein 32
ArabidopsisAT2G47850 (AT2G47850)
Zinc finger C-x8-C-x5-C-x3-H type family protein [Source:NCBI gene (formerly Entrezgene);Acc:819397]
identity=63.5; qcov=0.984; evalue=1.36e-157; confidence=high
RiceOs01g0257400 (OsC3H5)
-
identity=50.4; qcov=1.02; evalue=5.13e-113; confidence=high
GOGO:0003729 (mRNA binding); GO:0046872 (metal ion binding)
KEGG-
PfamPF00642 (zf-CCCH); PF14608 (zf-CCCH_2)
InterPro-
eggNOG-
NRGeneID:131000488

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057782392.1
2 Cytoplasm 细胞质 0.40000 XP_057782393.1
3 Chromosome 染色体 0.00000 XP_057782392.1
4 Centromere 着丝粒 0.00000 XP_057782392.1
5 Chromatin 染色质 0.00000 XP_057782392.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:6670592 C T EMS_canonical_SNV CDS_variant 2 B26,C19
Chr8:6670699 C T EMS_canonical_SNV CDS_variant 2 B101,B4
Chr8:6670794 G A EMS_canonical_SNV CDS_variant 4 B16,B8,C27,C84
Chr8:6670813 C T EMS_canonical_SNV CDS_variant 4 B2,B29,B61,C74

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782392.1
422 aa
N
1
211
422
zf-CCCH
zf-CCCH_2
zf-CCCH
zf-CCCH_2
zf-CCCH
zf-CCCH_2
zf-CCCH
zf-CCCH_2
zf-CCCH
zf-CCCH_2
C
PF00642 zf-CCCH 38-63 aa PF14608 zf-CCCH_2 41-62 aa PF00642 zf-CCCH 79-104 aa PF14608 zf-CCCH_2 82-103 aa PF00642 zf-CCCH 125-150 aa PF14608 zf-CCCH_2 129-149 aa PF00642 zf-CCCH 280-305 aa PF14608 zf-CCCH_2 285-304 aa PF00642 zf-CCCH 327-351 aa PF14608 zf-CCCH_2 330-351 aa
XP_057782393.1
368 aa
N
1
184
368
zf-CCCH
zf-CCCH_2
zf-CCCH
zf-CCCH_2
zf-CCCH
zf-CCCH_2
zf-CCCH
zf-CCCH_2
zf-CCCH
zf-CCCH_2
C
PF00642 zf-CCCH 38-63 aa PF14608 zf-CCCH_2 41-62 aa PF00642 zf-CCCH 79-104 aa PF14608 zf-CCCH_2 82-103 aa PF00642 zf-CCCH 125-150 aa PF14608 zf-CCCH_2 129-149 aa PF00642 zf-CCCH 280-305 aa PF14608 zf-CCCH_2 285-304 aa PF00642 zf-CCCH 327-351 aa PF14608 zf-CCCH_2 330-351 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057782392.1 Pfam PF00642 zf-CCCH Family 38 63 1.1e-45 153.5 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
XP_057782392.1 Pfam PF14608 zf-CCCH_2 Domain 41 62 2.1e-17 63.6 RNA-binding, Nab2-type zinc finger
XP_057782392.1 Pfam PF00642 zf-CCCH Family 79 104 1.1e-45 153.5 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
XP_057782392.1 Pfam PF14608 zf-CCCH_2 Domain 82 103 2.1e-17 63.6 RNA-binding, Nab2-type zinc finger
XP_057782392.1 Pfam PF00642 zf-CCCH Family 125 150 1.1e-45 153.5 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
XP_057782392.1 Pfam PF14608 zf-CCCH_2 Domain 129 149 2.1e-17 63.6 RNA-binding, Nab2-type zinc finger
XP_057782392.1 Pfam PF00642 zf-CCCH Family 280 305 1.1e-45 153.5 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
XP_057782392.1 Pfam PF14608 zf-CCCH_2 Domain 285 304 2.1e-17 63.6 RNA-binding, Nab2-type zinc finger
XP_057782392.1 Pfam PF00642 zf-CCCH Family 327 351 1.1e-45 153.5 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
XP_057782392.1 Pfam PF14608 zf-CCCH_2 Domain 330 351 2.1e-17 63.6 RNA-binding, Nab2-type zinc finger
XP_057782393.1 Pfam PF00642 zf-CCCH Family 38 63 4.6e-46 154.6 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
XP_057782393.1 Pfam PF14608 zf-CCCH_2 Domain 41 62 9e-18 64.7 RNA-binding, Nab2-type zinc finger
XP_057782393.1 Pfam PF00642 zf-CCCH Family 79 104 4.6e-46 154.6 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
XP_057782393.1 Pfam PF14608 zf-CCCH_2 Domain 82 103 9e-18 64.7 RNA-binding, Nab2-type zinc finger
XP_057782393.1 Pfam PF00642 zf-CCCH Family 125 150 4.6e-46 154.6 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
XP_057782393.1 Pfam PF14608 zf-CCCH_2 Domain 129 149 9e-18 64.7 RNA-binding, Nab2-type zinc finger
XP_057782393.1 Pfam PF00642 zf-CCCH Family 280 305 4.6e-46 154.6 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
XP_057782393.1 Pfam PF14608 zf-CCCH_2 Domain 285 304 9e-18 64.7 RNA-binding, Nab2-type zinc finger
XP_057782393.1 Pfam PF00642 zf-CCCH Family 327 351 4.6e-46 154.6 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
XP_057782393.1 Pfam PF14608 zf-CCCH_2 Domain 330 351 9e-18 64.7 RNA-binding, Nab2-type zinc finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057926409.1
TTCATTTAATGCTTTTGTTGCACACACTTTGGCGGGTATCATACAAGCACAGACCAAACTCTAGAGAGAGAAAGAGATAGAGTGAGCTTAAATACCATTCCGTACGAACGAACACTATACTTACAACTCCAGAATTCAGACACTGTACAAAATACACGCAAAAAAAACTCAGAAACAGAAAAGGGCAACCGCTCTCAAATCTCACTTTTTTTGAGAAATCCCCCTATCTCTCTCTCTTAAACCTCCATAGCACTGCATAG...
XM_057926410.1
TCATTTAATGCTTTTGTTGCACACACTTTGGCGGGTATCATACAAGCACAGACCAAACTCTAGAGAGAGAAAGAGATAGAGTGAGCTTAAATACCATTCCGTACGAACGAACACTATACTTACAACTCCAGAATTCAGACACTGTACAAAATACACGCAAAAAAAACTCAGAAACAGAAAAGGGCAACCGCTCTCAAATCTCACTTTTTTTGAGAAATCCCCCTATCTCTCTCTCTTAAACCTCCATAGCACTGCATAGT...

CDS

2 records

下载 CDS FASTA
LOC131000488
ATGGCGTTGTACGGGGATCAGCAGCAGGTGGAATGGCCTCAGGATTCGGGTTTGGAAGACTCTATGCGGAGGTTGAGTTTATGGGAGAGAGAAGTGTACCCGGAGAGGCCGGGTCTACCCGACTGCGCCTACTATGTGCGAACCGGGTCGTGTGGATACGGCGCCAAGTGCCGTTACAATCACCCTCGGGATCGTAGCAGCTCGTTGGGAGTGGGAGAGTATCCTGAGCGAGTAGGGGAGCCTCCATGCCAGTACTATTT...
LOC131000488
ATGGCGTTGTACGGGGATCAGCAGCAGGTGGAATGGCCTCAGGATTCGGGTTTGGAAGACTCTATGCGGAGGTTGAGTTTATGGGAGAGAGAAGTGTACCCGGAGAGGCCGGGTCTACCCGACTGCGCCTACTATGTGCGAACCGGGTCGTGTGGATACGGCGCCAAGTGCCGTTACAATCACCCTCGGGATCGTAGCAGCTCGTTGGGAGTGGGAGAGTATCCTGAGCGAGTAGGGGAGCCTCCATGCCAGTACTATTT...

Protein

2 records

下载 Protein FASTA
XP_057782392.1
MALYGDQQQVEWPQDSGLEDSMRRLSLWEREVYPERPGLPDCAYYVRTGSCGYGAKCRYNHPRDRSSSLGVGEYPERVGEPPCQYYLRTGTCKFGMSCKFNHPKNAGGSLTSAPLNSYGYPLRPGEKECSYYLKTGQCKFGITCKFDHPQSDGTSVSASARPFYPTVQSLSSPSHEQYDSTTSSYRVARPSLLPGSYVAGAYGPMLLPGVVPIPNWNPHSGPVSPAPSPGGQGSVGATSVYGLSQLGSSPPAFVGAYSHL...
XP_057782393.1
MALYGDQQQVEWPQDSGLEDSMRRLSLWEREVYPERPGLPDCAYYVRTGSCGYGAKCRYNHPRDRSSSLGVGEYPERVGEPPCQYYLRTGTCKFGMSCKFNHPKNAGGSLTSAPLNSYGYPLRPGEKECSYYLKTGQCKFGITCKFDHPQSDGTSVSASARPFYPTVQSLSSPSHEQYDSTTSSYRVARPSLLPGSYVAGAYGPMLLPGVVPIPNWNPHSGPVSPAPSPGGQGSVGATSVYGLSQLGSSPPAFVGAYSHL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器