当前解析结果
SmilChr08G000915| 统一新 Gene ID | SmilChr08G000915 |
|---|---|
| 名称 | SmilChr08G000915 |
| 描述 | protein TRANSPORT INHIBITOR RESPONSE 1-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 6758689 - 6761967 / - |
| NCBI Gene ID | LOC131000501 |
|---|---|
| GeneID | 131000501 |
| locus_tag | - |
| NCBI Name | LOC131000501 |
| 原始查询 | SmilChr08G000915 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein TRANSPORT INHIBITOR RESPONSE 1-like |
| 产物 | protein TRANSPORT INHIBITOR RESPONSE 1-like |
| Arabidopsis | AT3G62980 (TIR1)F-box/RNI-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:825473] identity=78.9; qcov=1; evalue=0; confidence=high |
| Rice | Os04g0395600 (OsAFB2)- identity=60.4; qcov=0.988; evalue=0; confidence=high |
| GO | GO:0005515 (protein binding); GO:0019005 (SCF ubiquitin ligase complex); GO:0031146 (SCF-dependent proteasomal ubiquitin-dependent protein catabolic process) |
| KEGG | smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00646 (F-box); PF12937 (F-box-like); PF18511 (F-box_5); PF18791 (Transp_inhibit) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000501 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057782415.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057782415.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057782415.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057782415.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057782415.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:6759088 |
C |
CT |
1bp_insertion | frameshift_variant | 1 | C6 |
Chr8:6759088 |
C |
CT |
1bp_insertion | CDS_variant | 1 | C6 |
Chr8:6759324 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B111 |
Chr8:6759324 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B111 |
Chr8:6759351 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B99,C87 |
Chr8:6759361 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B131,B41 |
Chr8:6759454 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B126,B13,B48,C2,C4 |
Chr8:6759496 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B66,B8 |
Chr8:6759610 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B131,B41 |
Chr8:6759617 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B99,C87 |
Chr8:6759688 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B118,B139,C14 |
Chr8:6759703 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C6 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057782415.1PF18511
F-box_5 3-42 aa
PF00646
F-box 5-43 aa
PF12937
F-box-like 6-36 aa
PF18791
Transp_inhibit 62-108 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057782415.1 |
Pfam | PF18511 |
F-box_5 | Domain | 3 | 42 | 7.2e-20 | 71.0 | F-box |
XP_057782415.1 |
Pfam | PF00646 |
F-box | Domain | 5 | 43 | 7.1e-05 | 23.3 | F-box domain |
XP_057782415.1 |
Pfam | PF12937 |
F-box-like | Domain | 6 | 36 | 5.2e-09 | 36.5 | F-box-like |
XP_057782415.1 |
Pfam | PF18791 |
Transp_inhibit | Repeat | 62 | 108 | 1.2e-25 | 89.5 | Transport inhibitor response 1 protein domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。