Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G000917

染色体: Chr08 坐标: 6787308-6789453 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G000917
名称SmilChr08G000917
描述protein NETWORKED 3C-like
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向6787308 - 6789453 / +

ID 对照

NCBI Gene IDLOC131000503
GeneID131000503
locus_tag-
NCBI NameLOC131000503
原始查询SmilChr08G000917

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述protein NETWORKED 3C-like
产物protein NETWORKED 3C-like
ArabidopsisAT2G47920 (NET3C)
Kinase interacting (KIP1-like) family protein [Source:NCBI gene (formerly Entrezgene);Acc:819404]
identity=42.1; qcov=0.923; evalue=7.7e-51; confidence=medium
RiceOs07g0666600 (P0450A04.120)
-
identity=39.2; qcov=1.14; evalue=7.46e-49; confidence=medium
GOGO:0003779 (actin binding); GO:0005774 (vacuolar membrane)
KEGG-
PfamPF07765 (KIP1)
InterPro-
eggNOG-
NRGeneID:131000503

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 0.80000 XP_057782419.1
2 Nucleus membrane 核膜 0.60000 XP_057782419.1
3 Chromosome 染色体 0.00000 XP_057782419.1
4 Centromere 着丝粒 0.00000 XP_057782419.1
5 Chromatin 染色质 0.00000 XP_057782419.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:6788204 C T EMS_canonical_SNV CDS_variant 1 A19
Chr8:6788268 G A EMS_canonical_SNV CDS_variant 4 B109,B24,C2,C4
Chr8:6788833 C T EMS_canonical_SNV CDS_variant 3 A16,B140,B77
Chr8:6788932 GA G 1bp_deletion frameshift_variant 1 A25
Chr8:6788932 GA G 1bp_deletion CDS_variant 1 A25
Chr8:6789112 C T EMS_canonical_SNV stop_gained 1 A2
Chr8:6789112 C T EMS_canonical_SNV CDS_variant 1 A2
Chr8:6789138 C T EMS_canonical_SNV CDS_variant 1 C10
Chr8:6789205 GA G 1bp_deletion frameshift_variant 3 B37,C16,C40
Chr8:6789205 GA G 1bp_deletion CDS_variant 3 B37,C16,C40

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057782419.1
260 aa
N
1
130
260
KIP1
C
PF07765 KIP1 14-89 aa
XP_057782420.1
260 aa
N
1
130
260
KIP1
C
PF07765 KIP1 14-89 aa
XP_057782421.1
260 aa
N
1
130
260
KIP1
C
PF07765 KIP1 14-89 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057782419.1 Pfam PF07765 KIP1 Family 14 89 2.8e-34 117.8 KIP1-like protein
XP_057782420.1 Pfam PF07765 KIP1 Family 14 89 2.8e-34 117.8 KIP1-like protein
XP_057782421.1 Pfam PF07765 KIP1 Family 14 89 2.8e-34 117.8 KIP1-like protein

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057926438.1
TTTCAAGACCCAGATAAATGAAATCTCTATTGACCTATTTACCCTTGGAAATTAATCCAAGTCAGGTGACAAGTTAGTAAATAAAGTAGTCCATGAGGGGCAGAAGAGTCAATGAAACCGAGAATTTGAATTTGCAAGCGCTGGAAATCCCGAGGCCGTATGACACGTGGAGAGTTTGCGTTGGAGGAAAAAATGATTAATTAGAGTAAGACAATGCTGCGGAGTCCAAGGCGATCAAGTTTAAATTGTAGCTTCACTCT...
XM_057926437.1
CGATCAAGTTTAAATTGTAGCTTCACTCTCACTGGTTTTTCAAGAGCGTTTTTAGAGAGAGAGAGAGAGAAAGAGACAGGGCAGCGGCAGCCGTACGCCGTCGGAAAGAGCAAGCCAAGAAGAAGAAGAAGATGATGATGACGGAGGCGAAGAAGAAGGATTTATCACACTGGTGGTGGTTTGACAATCACAGCAAGGGCAGTCCGAATCGATCGCCATGGCTTCAGACAACACTTTCAGAGCTAGATGAGAAAACAAGA...

CDS

3 records

下载 CDS FASTA
LOC131000503
ATGATGATGACGGAGGCGAAGAAGAAGGATTTATCACACTGGTGGTGGTTTGACAATCACAGCAAGGGCAGTCCGAATCGATCGCCATGGCTTCAGACAACACTTTCAGAGCTAGATGAGAAAACAAGAGCAATGCTGCAGGTGATCGAGGAAGACGCGGATTCCTTCGCGCAACGCGCTGAGATGTACTACAAGAAGAGGCCCCAGCTGATGAGCATGGTGGAGGACTTGTACCGGACTCATCGCTCTCTAGCAGAGCG...
LOC131000503
ATGATGATGACGGAGGCGAAGAAGAAGGATTTATCACACTGGTGGTGGTTTGACAATCACAGCAAGGGCAGTCCGAATCGATCGCCATGGCTTCAGACAACACTTTCAGAGCTAGATGAGAAAACAAGAGCAATGCTGCAGGTGATCGAGGAAGACGCGGATTCCTTCGCGCAACGCGCTGAGATGTACTACAAGAAGAGGCCCCAGCTGATGAGCATGGTGGAGGACTTGTACCGGACTCATCGCTCTCTAGCAGAGCG...

Protein

3 records

下载 Protein FASTA
XP_057782419.1
MMMTEAKKKDLSHWWWFDNHSKGSPNRSPWLQTTLSELDEKTRAMLQVIEEDADSFAQRAEMYYKKRPQLMSMVEDLYRTHRSLAERYDQVKSEHGSRLPSSPWSSSPSPLPFTRYRLEKSLSLTEGAYDSYSEAYGPDESDESEVDDPDEAEEVVVGSDVPNVVPDEEELVRLREEVMRLVEENAEQREQLKAKDEEKREVIRQLSRGMELLREENVMLRERLSKKTPKKENQVEYSKMKENFFERLFNGFGKPPVIAL
XP_057782420.1
MMMTEAKKKDLSHWWWFDNHSKGSPNRSPWLQTTLSELDEKTRAMLQVIEEDADSFAQRAEMYYKKRPQLMSMVEDLYRTHRSLAERYDQVKSEHGSRLPSSPWSSSPSPLPFTRYRLEKSLSLTEGAYDSYSEAYGPDESDESEVDDPDEAEEVVVGSDVPNVVPDEEELVRLREEVMRLVEENAEQREQLKAKDEEKREVIRQLSRGMELLREENVMLRERLSKKTPKKENQVEYSKMKENFFERLFNGFGKPPVIAL

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器