当前解析结果
SmilChr08G000917| 统一新 Gene ID | SmilChr08G000917 |
|---|---|
| 名称 | SmilChr08G000917 |
| 描述 | protein NETWORKED 3C-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 6787308 - 6789453 / + |
| NCBI Gene ID | LOC131000503 |
|---|---|
| GeneID | 131000503 |
| locus_tag | - |
| NCBI Name | LOC131000503 |
| 原始查询 | SmilChr08G000917 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein NETWORKED 3C-like |
| 产物 | protein NETWORKED 3C-like |
| Arabidopsis | AT2G47920 (NET3C)Kinase interacting (KIP1-like) family protein [Source:NCBI gene (formerly Entrezgene);Acc:819404] identity=42.1; qcov=0.923; evalue=7.7e-51; confidence=medium |
| Rice | Os07g0666600 (P0450A04.120)- identity=39.2; qcov=1.14; evalue=7.46e-49; confidence=medium |
| GO | GO:0003779 (actin binding); GO:0005774 (vacuolar membrane) |
| KEGG | - |
| Pfam | PF07765 (KIP1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000503 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057782419.1 |
| 2 | Nucleus membrane | 核膜 | 0.60000 | XP_057782419.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057782419.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057782419.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057782419.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:6788204 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A19 |
Chr8:6788268 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B109,B24,C2,C4 |
Chr8:6788833 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A16,B140,B77 |
Chr8:6788932 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | A25 |
Chr8:6788932 |
GA |
G |
1bp_deletion | CDS_variant | 1 | A25 |
Chr8:6789112 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | A2 |
Chr8:6789112 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A2 |
Chr8:6789138 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C10 |
Chr8:6789205 |
GA |
G |
1bp_deletion | frameshift_variant | 3 | B37,C16,C40 |
Chr8:6789205 |
GA |
G |
1bp_deletion | CDS_variant | 3 | B37,C16,C40 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057782419.1PF07765
KIP1 14-89 aa
XP_057782420.1PF07765
KIP1 14-89 aa
XP_057782421.1PF07765
KIP1 14-89 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057782419.1 |
Pfam | PF07765 |
KIP1 | Family | 14 | 89 | 2.8e-34 | 117.8 | KIP1-like protein |
XP_057782420.1 |
Pfam | PF07765 |
KIP1 | Family | 14 | 89 | 2.8e-34 | 117.8 | KIP1-like protein |
XP_057782421.1 |
Pfam | PF07765 |
KIP1 | Family | 14 | 89 | 2.8e-34 | 117.8 | KIP1-like protein |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。