Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000922`

染色体: Chr08 坐标: 6814133-6821352 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000922`
名称	SmilChr08G000922
描述	bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	6814133 - 6821352 / `+`

ID 对照

NCBI Gene ID	`LOC131000507`
GeneID	`131000507`
locus_tag	`-`
NCBI Name	`LOC131000507`
原始查询	`SmilChr08G000922`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like
产物	bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase%2C chloroplastic-like
Arabidopsis	`AT3G06350` (MEE32) dehydroquinate dehydratase, putative / shikimate dehydrogenase [Source:NCBI gene (formerly Entrezgene);Acc:819809] identity=42.8; qcov=1; evalue=9.29e-128; confidence=medium
Rice	`Os01g0375200` (DHQDT/SDH) - identity=43.9; qcov=0.984; evalue=3.54e-126; confidence=medium
GO	GO:0003855 (3-dehydroquinate dehydratase activity); GO:0004764 (shikimate 3-dehydrogenase (NADP+) activity); GO:0009423 (chorismate biosynthetic process); GO:0019632 (shikimate metabolic process)
KEGG	smil00400 (Phenylalanine, tyrosine and tryptophan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00999 (Biosynthesis of various plant secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage))
Pfam	PF01487 (DHquinase_I); PF01488 (Shikimate_DH); PF08501 (Shikimate_dh_N)
InterPro	-
eggNOG	-
NR	GeneID:131000507

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057782427.1`
2	Cytoplasm	细胞质	0.60000	`XP_057782427.1`
3	Chloroplast	叶绿体	0.20000	`XP_057782428.1`
4	Nucleus	细胞核	0.00000	`XP_057782427.1`
5	Chromosome	染色体	0.00000	`XP_057782427.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:6819185`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B25,B67,C83
`Chr8:6819188`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B109,B24
`Chr8:6819245`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A18
`Chr8:6819247`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A18
`Chr8:6819718`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B97
`Chr8:6821077`	`AT`	`A`	1bp_deletion	frameshift_variant	1	C54
`Chr8:6821077`	`AT`	`A`	1bp_deletion	CDS_variant	1	C54

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782427.1

517 aa

258

517

DHquinase_I

Shikimate_dh_N

Shikimate_DH

PF01487 DHquinase_I 9-229 aa PF08501 Shikimate_dh_N 238-318 aa PF01488 Shikimate_DH 359-416 aa

XP_057782428.1

511 aa

256

511

DHquinase_I

Shikimate_dh_N

Shikimate_DH

PF01487 DHquinase_I 9-229 aa PF08501 Shikimate_dh_N 238-318 aa PF01488 Shikimate_DH 359-416 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782427.1`	Pfam	`PF01487`	DHquinase_I	Domain	9	229	2.6e-41	142.8	Type I 3-dehydroquinase
`XP_057782427.1`	Pfam	`PF08501`	Shikimate_dh_N	Domain	238	318	9.3e-23	81.0	Shikimate dehydrogenase substrate binding domain
`XP_057782427.1`	Pfam	`PF01488`	Shikimate_DH	Family	359	416	1.9e-06	28.7	Shikimate / quinate 5-dehydrogenase
`XP_057782428.1`	Pfam	`PF01487`	DHquinase_I	Domain	9	229	2.5e-41	142.9	Type I 3-dehydroquinase
`XP_057782428.1`	Pfam	`PF08501`	Shikimate_dh_N	Domain	238	318	9e-23	81.1	Shikimate dehydrogenase substrate binding domain
`XP_057782428.1`	Pfam	`PF01488`	Shikimate_DH	Family	359	416	1.9e-06	28.7	Shikimate / quinate 5-dehydrogenase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057926444.1
ACTTGCCATATGACGTCAAAATTTGTTTCGTTCCCGTTAAATAGGAGCCAGTCAAATGCAGATTCTAATTACATAGAACAATTAATTTGTTGAAGATTCTGTTTCTCTCTCATCAGTGATGGGGTGGAAGAGTGATCTTCTAGTGTGCACAAGCTTAGAATGCGAAACAGGGGAGGAAATGCTTATATCCATGGACTTAGCCAAGAAACAAGGCGCAGATATTGTGGAACTCTGCGTTGCTTCTCTCTCTTTCTCTCACA...

XM_057926445.1
CATATGACGTCAAAATTTGTTTCGTTCCCGTTAAATAGGAGCCAGTCAAATGCAGATTCTAATTACATAGAACAATTAATTTGTTGAAGATTCTGTTTCTCTCTCATCAGTGATGGGGTGGAAGAGTGATCTTCTAGTGTGCACAAGCTTAGAATGCGAAACAGGGGAGGAAATGCTTATATCCATGGACTTAGCCAAGAAACAAGGCGCAGATATTGTGGAACTCTGCGTTGCTTCTCTCTCTTTCTCTCACATTTCTG...

CDS

2 records

下载 CDS FASTA

LOC131000507
ATGGGGTGGAAGAGTGATCTTCTAGTGTGCACAAGCTTAGAATGCGAAACAGGGGAGGAAATGCTTATATCCATGGACTTAGCCAAGAAACAAGGCGCAGATATTGTGGAACTCTGCGTTGCTTCTCTCTCTTTCTCTCACATTTCTGAAGTTGAGCAGCTTCTCAAGCTCAGGAACTTGCCTTCAATCGTCTCCCTCGGATGTACAGATCAACGAAGAAGACATTCTATCATAGAGGCCACGTGGCTTCAAATTCTAAA...

Protein

2 records

下载 Protein FASTA

XP_057782427.1
MGWKSDLLVCTSLECETGEEMLISMDLAKKQGADIVELCVASLSFSHISEVEQLLKLRNLPSIVSLGCTDQRRRHSIIEATWLQILNRAVAVGVEFVEINHEVRAWEIVSKLKRQVSNTKVIVSNYVNTGNLTAETLGDLIVDMQSANADIIKLVINVDSITHVAPIFHVLTHCQVPLIARAVGDRGLISQLLGPKYGAFIVSGSLNGKTEPGLPPLASIRQIYKLHYMDSHTKIFGVVSNPVGHSKGPLLHNPAFRHTG...

XP_057782428.1
MGWKSDLLVCTSLECETGEEMLISMDLAKKQGADIVELCVASLSFSHISEVEQLLKLRNLPSIVSLGCTDQRRRHSIIEATWLQILNRAVAVGVEFVEINHEVRAWEIVSKLKRQVSNTKVIVSNYVNTGNLTAETLGDLIVDMQSANADIIKLVINVDSITHVAPIFHVLTHCQVPLIARAVGDRGLISQLLGPKYGAFIVSGSLNGKTEPGLPPLASIRQIYKLHYMDSHTKIFGVVSNPVGHSKGPLLHNPAFRHTG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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