当前解析结果
SmilChr08G000924| 统一新 Gene ID | SmilChr08G000924 |
|---|---|
| 名称 | SmilChr08G000924 |
| 描述 | uncharacterized SmilChr08G000924 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 6823274 - 6828229 / + |
| NCBI Gene ID | LOC131000508 |
|---|---|
| GeneID | 131000508 |
| locus_tag | - |
| NCBI Name | LOC131000508 |
| 原始查询 | SmilChr08G000924 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | BRCT domain-containing DNA repair protein [Source:NCBI gene (formerly Entrezgene);Acc:828068]; symbol=AT4G03130; hit=AT4G03130; species=arabidopsis; confidence=weak |
| 产物 | BRCT domain-containing DNA repair protein [Source:NCBI gene (formerly Entrezgene);Acc:828068]; symbol=AT4G03130; hit=AT4G03130; species=arabidopsis; confidence=weak |
| Arabidopsis | AT4G03130 (AT4G03130)BRCT domain-containing DNA repair protein [Source:NCBI gene (formerly Entrezgene);Acc:828068] identity=58.33; qcov=0.226; evalue=1.6e-70; confidence=weak |
| Rice | Os05g0147133- identity=53.15; qcov=0.217; evalue=3.47e-62; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | PF00533 (BRCT); PF16589 (BRCT_2); PF16770 (RTT107_BRCT_5) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000508 |
| Rank | 定位位置 | 中文 | 五折投票比例 | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057782429.1 |
| 2 | Chromosome | 染色体 | 0.80000 | XP_057782429.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:6823881 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C57 |
Chr8:6823950 |
C |
T |
EMS_canonical_SNV | stop_gained | 20 | A16,A18,B124,B138,B36,B42,B43,B44,B62,B7,B77,B98,C1,C14,C3,C45,C48,C8,D11,D7 |
Chr8:6824701 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | B89 |
Chr8:6824701 |
GA |
G |
1bp_deletion | CDS_variant | 1 | B89 |
Chr8:6824884 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B138,B62,C1,C48 |
Chr8:6825009 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B138,B62,C1,C48 |
Chr8:6825098 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A16,B124,B77,C3 |
Chr8:6825174 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B140,C82 |
Chr8:6825274 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B67,C83 |
Chr8:6825378 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:6825431 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A19,B103,B132,B25,C15 |
Chr8:6825434 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B124,D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057782429.1PF00533
BRCT 796-862 aa
PF16770
RTT107_BRCT_5 802-875 aa
PF16589
BRCT_2 900-990 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057782429.1 |
Pfam | PF00533 |
BRCT | Domain | 796 | 862 | 3.2e-05 | 24.8 | BRCA1 C Terminus (BRCT) domain |
XP_057782429.1 |
Pfam | PF16770 |
RTT107_BRCT_5 | Domain | 802 | 875 | 2.3e-07 | 31.3 | Regulator of Ty1 transposition protein 107 BRCT domain |
XP_057782429.1 |
Pfam | PF16589 |
BRCT_2 | Domain | 900 | 990 | 2.5e-14 | 54.1 | BRCT domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。