Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G000925

染色体: Chr08 坐标: 6831017-6834446 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G000925
名称SmilChr08G000925
描述uncharacterized SmilChr08G000925
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向6831017 - 6834446 / +

ID 对照

NCBI Gene IDLOC131000509
GeneID131000509
locus_tag-
NCBI NameLOC131000509
原始查询SmilChr08G000925

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述DCD (Development and Cell Death) domain protein [Source:NCBI gene (formerly Entrezgene);Acc:817853]; symbol=AT2G32910; hit=AT2G32910; species=arabidopsis; confidence=medium
产物DCD (Development and Cell Death) domain protein [Source:NCBI gene (formerly Entrezgene);Acc:817853]; symbol=AT2G32910; hit=AT2G32910; species=arabidopsis; confidence=medium
ArabidopsisAT2G32910 (AT2G32910)
DCD (Development and Cell Death) domain protein [Source:NCBI gene (formerly Entrezgene);Acc:817853]
identity=39.7; qcov=0.758; evalue=1.69e-49; confidence=medium
RiceOs02g0745600
-
identity=54; qcov=0.303; evalue=1.13e-38; confidence=low
GO-
KEGG-
PfamPF10539 (Dev_Cell_Death)
InterPro-
eggNOG-
NRGeneID:131000509

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057782431.1
2 Cytoplasm 细胞质 0.60000 XP_057782431.1
3 Cytoplasmic granule 细胞质颗粒 0.60000 XP_057782431.1
4 Cytoplasmic ribonucleoprotein granule Cytoplasmic ribonucleoprotein granule 0.40000 XP_057782431.1
5 P-body P-body 0.40000 XP_057782431.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:6832727 C T EMS_canonical_SNV CDS_variant 1 B124
Chr8:6832728 G A EMS_canonical_SNV CDS_variant 1 B99
Chr8:6833060 G A EMS_canonical_SNV CDS_variant 1 C83
Chr8:6833315 C T EMS_canonical_SNV CDS_variant 4 A19,B103,B132,C15
Chr8:6833438 C T EMS_canonical_SNV CDS_variant 5 A19,B103,B104,B132,C15
Chr8:6833735 C T EMS_canonical_SNV CDS_variant 1 D11
Chr8:6833990 C T EMS_canonical_SNV CDS_variant 1 C57

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057782431.1
409 aa
N
1
204
409
Dev_Cell_Death
C
PF10539 Dev_Cell_Death 1-119 aa
XP_057782432.1
409 aa
N
1
204
409
Dev_Cell_Death
C
PF10539 Dev_Cell_Death 1-119 aa
XP_057782433.1
409 aa
N
1
204
409
Dev_Cell_Death
C
PF10539 Dev_Cell_Death 1-119 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057782431.1 Pfam PF10539 Dev_Cell_Death Domain 1 119 3.9e-46 156.7 Development and cell death domain
XP_057782432.1 Pfam PF10539 Dev_Cell_Death Domain 1 119 3.9e-46 156.7 Development and cell death domain
XP_057782433.1 Pfam PF10539 Dev_Cell_Death Domain 1 119 3.9e-46 156.7 Development and cell death domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057926449.1
GTTTTCGGGCCTTTGACGTGCAATCTACGGGCCCAGCCCACAATAAAGAGCCCGAATTTTCTCCTTAATTCGTAGTACTACGTACTCTACTCGTTTATAGTTTTAACGCACACTTCTCTCTCTTTGCCCTTATTCGGGACATCGGCGGCTCGGCGGCAAAATCCGCAGAATTTCACGTATTTAGTTTGACTTTGAGGTAGGTTAGCCTGTACAAATATGGCCAGGAAAAGCAAGAGAAGAGCTAGTGCTGCCACTAAATC...
XM_057926450.1
GTTTTCGGGCCTTTGACGTGCAATCTACGGGCCCAGCCCACAATAAAGAGCCCGAATTTTCTCCTTAATTCGTAGTACTACGTACTCTACTCGTTTATAGTTTTAACGCACACTTCTCTCTCTTTGCCCTTATTCGGGACATCGGCGGCTCGGCGGCAAAATCCGCAGAATTTCACGGAAAAGCAAGAGAAGAGCTAGTGCTGCCACTAAATCTACTTCAGAAGAGGTTGTTTCTAACAAGAAACTGAAAGCCAGTGCAG...

CDS

3 records

下载 CDS FASTA
LOC131000509
ATGTGCAACTCGAAAACTAAACCAGATTGCTTTAGATACCAAATAATGGGTTTGCCAGCACACAAGAAAGAGGTTGTGATGAACATCAAGCCTGGTCTTAAATTTTTCCTTTATGATTACGATCTCAAGCTCATGTATGGGGTCTTTGAAGCATCGTCTGCGGGTGGCATGAAACTTGAGCCAACAGCTTTTGATGGGGCTTTCCCAGCTCAGGTCCGTTTCATTGTTCACAAGGCATGCCTTCCACTACCTGAGAGTGT...
LOC131000509
ATGTGCAACTCGAAAACTAAACCAGATTGCTTTAGATACCAAATAATGGGTTTGCCAGCACACAAGAAAGAGGTTGTGATGAACATCAAGCCTGGTCTTAAATTTTTCCTTTATGATTACGATCTCAAGCTCATGTATGGGGTCTTTGAAGCATCGTCTGCGGGTGGCATGAAACTTGAGCCAACAGCTTTTGATGGGGCTTTCCCAGCTCAGGTCCGTTTCATTGTTCACAAGGCATGCCTTCCACTACCTGAGAGTGT...

Protein

3 records

下载 Protein FASTA
XP_057782431.1
MCNSKTKPDCFRYQIMGLPAHKKEVVMNIKPGLKFFLYDYDLKLMYGVFEASSAGGMKLEPTAFDGAFPAQVRFIVHKACLPLPESVFKKAIRDSYDEKKRKFQTELTVKQVKNLIGMFNPTPLLHPNGKSMVQDSTYCSAPPATSFSEEYLRQRYLTKCGNSDTHEKQFSDNHVTHSPVPPRDPLFLSEQEYRSNGLQQGRHLLPETAGDNVSNRSVPKKLDLELKHLLRNPVSTSMGSAMQQREVNQPDPFYLSEKEY...
XP_057782432.1
MCNSKTKPDCFRYQIMGLPAHKKEVVMNIKPGLKFFLYDYDLKLMYGVFEASSAGGMKLEPTAFDGAFPAQVRFIVHKACLPLPESVFKKAIRDSYDEKKRKFQTELTVKQVKNLIGMFNPTPLLHPNGKSMVQDSTYCSAPPATSFSEEYLRQRYLTKCGNSDTHEKQFSDNHVTHSPVPPRDPLFLSEQEYRSNGLQQGRHLLPETAGDNVSNRSVPKKLDLELKHLLRNPVSTSMGSAMQQREVNQPDPFYLSEKEY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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