当前解析结果
SmilChr08G000925| 统一新 Gene ID | SmilChr08G000925 |
|---|---|
| 名称 | SmilChr08G000925 |
| 描述 | uncharacterized SmilChr08G000925 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 6831017 - 6834446 / + |
| NCBI Gene ID | LOC131000509 |
|---|---|
| GeneID | 131000509 |
| locus_tag | - |
| NCBI Name | LOC131000509 |
| 原始查询 | SmilChr08G000925 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DCD (Development and Cell Death) domain protein [Source:NCBI gene (formerly Entrezgene);Acc:817853]; symbol=AT2G32910; hit=AT2G32910; species=arabidopsis; confidence=medium |
| 产物 | DCD (Development and Cell Death) domain protein [Source:NCBI gene (formerly Entrezgene);Acc:817853]; symbol=AT2G32910; hit=AT2G32910; species=arabidopsis; confidence=medium |
| Arabidopsis | AT2G32910 (AT2G32910)DCD (Development and Cell Death) domain protein [Source:NCBI gene (formerly Entrezgene);Acc:817853] identity=39.7; qcov=0.758; evalue=1.69e-49; confidence=medium |
| Rice | Os02g0745600- identity=54; qcov=0.303; evalue=1.13e-38; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF10539 (Dev_Cell_Death) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000509 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057782431.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057782431.1 |
| 3 | Cytoplasmic granule | 细胞质颗粒 | 0.60000 | XP_057782431.1 |
| 4 | Cytoplasmic ribonucleoprotein granule | Cytoplasmic ribonucleoprotein granule | 0.40000 | XP_057782431.1 |
| 5 | P-body | P-body | 0.40000 | XP_057782431.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:6832727 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B124 |
Chr8:6832728 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B99 |
Chr8:6833060 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr8:6833315 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A19,B103,B132,C15 |
Chr8:6833438 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A19,B103,B104,B132,C15 |
Chr8:6833735 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:6833990 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C57 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057782431.1PF10539
Dev_Cell_Death 1-119 aa
XP_057782432.1PF10539
Dev_Cell_Death 1-119 aa
XP_057782433.1PF10539
Dev_Cell_Death 1-119 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057782431.1 |
Pfam | PF10539 |
Dev_Cell_Death | Domain | 1 | 119 | 3.9e-46 | 156.7 | Development and cell death domain |
XP_057782432.1 |
Pfam | PF10539 |
Dev_Cell_Death | Domain | 1 | 119 | 3.9e-46 | 156.7 | Development and cell death domain |
XP_057782433.1 |
Pfam | PF10539 |
Dev_Cell_Death | Domain | 1 | 119 | 3.9e-46 | 156.7 | Development and cell death domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。