Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000961`

染色体: Chr08 坐标: 7157137-7160185 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000961`
名称	SmilChr08G000961
描述	uncharacterized SmilChr08G000961
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	7157137 - 7160185 / `+`

ID 对照

NCBI Gene ID	`LOC131000596`
GeneID	`131000596`
locus_tag	`-`
NCBI Name	`LOC131000596`
原始查询	`SmilChr08G000961`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:2745748]; symbol=AT1G08125; hit=AT1G08125; species=arabidopsis; confidence=high
产物	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:2745748]; symbol=AT1G08125; hit=AT1G08125; species=arabidopsis; confidence=high
Arabidopsis	`AT1G08125` (AT1G08125) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:2745748] identity=60.9; qcov=1.03; evalue=3.42e-134; confidence=high
Rice	`Os02g0818700` - identity=63.1; qcov=0.99; evalue=8.06e-128; confidence=high
GO	-
KEGG	-
Pfam	PF10294 (Methyltransf_16)
InterPro	-
eggNOG	-
NR	GeneID:131000596

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057782588.1`
2	Nucleus	细胞核	0.80000	`XP_057782588.1`
3	Cytoplasm	细胞质	0.80000	`XP_057782588.1`
4	Nucleoplasm	核质	0.20000	`XP_057782588.1`
5	Chromosome	染色体	0.00000	`XP_057782588.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:7158197`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr8:7158227`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B1,B31,C10
`Chr8:7158228`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B45,B90,B92,C87
`Chr8:7158869`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:7159071`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A13,A4,B26
`Chr8:7159246`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C19
`Chr8:7159824`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C10
`Chr8:7159898`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B35

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782588.1

304 aa

152

304

Methyltransf_16

PF10294 Methyltransf_16 21-187 aa

XP_057782589.1

304 aa

152

304

Methyltransf_16

PF10294 Methyltransf_16 21-187 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782588.1`	Pfam	`PF10294`	Methyltransf_16	Family	21	187	7.3e-30	104.7	Lysine methyltransferase
`XP_057782589.1`	Pfam	`PF10294`	Methyltransf_16	Family	21	187	7.3e-30	104.7	Lysine methyltransferase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057926606.1
GATTAGGGATTAAAGAGTCTTTTCACTTTGCCTCACAAAAGAAAAAAGGAGTCTTTTCACTACGGGGGGCAAGGAGTCCTCTTTGAGTTAGCAGACGAGGGATTTGTGTTGCAAAAACGTAATCAGCTGCGTGAATTAGCGTTAATCACATCGGCTGGTGGTGTAAAGACACTCAACCTTCAATCCCAGATCTTGAAATTCAAGAGTTGATTTTGTACCACATTTTCAAATGGAAGCAGACAGGCTAAATTCTCCGGACA...

XM_057926605.1
GTCTTTTCACTTTGCCTCACAAAAGAAAAAAGGAGTCTTTTCACTACGGGGGGCAAGGAGTCCTCTTTGAGTTAGCAGACGAGGGATTTGTGTTGCAAAAACGTAATCAGCTGCGTGAATTAGCGTTAATCACATCGGCTGGTGGTGTAAAGACACTCAACCTTCAATCCCAGTGAAGATCTTGAAATTCAAGAGTTGATTTTGTACCACATTTTCAAATGGAAGCAGACAGGCTAAATTCTCCGGACACATCGGCAGTA...

CDS

2 records

下载 CDS FASTA

LOC131000596
ATGGAAGCAGACAGGCTAAATTCTCCGGACACATCGGCAGTAACATTCGAAGTTCTCGGCCATCAGCTGCATTTTGCGCAGGACCCAAATTCTAAGCATTTAGGGACTACTGTTTGGGATGCATCAATGGTGTTTGCCAAATTTCTGGAAAAGAATTGTAGGAAGGGGAGATTTTCACCATCCAAACTGAAAGGGAAGCGCGTGATTGAACTCGGAGCAGGATGTGGCGTAGCCGGATTTGGCATGGCATTGCTGGGATG...

Protein

2 records

下载 Protein FASTA

XP_057782588.1
MEADRLNSPDTSAVTFEVLGHQLHFAQDPNSKHLGTTVWDASMVFAKFLEKNCRKGRFSPSKLKGKRVIELGAGCGVAGFGMALLGCDVVSTDQTEVLPLLMRNAERNTSRILQTLPDPDSFGSIQVAELNWGNADHIRAVEPPFDYIIGTDVVYAEHLLEPLLQTILSLSGPRTTILLGYELRSTNVHDQMLELWKSNFQVKSVPKSKMHSLYQHPSIQLFMMSPKPSGCKVDETDCSGEEIKSEETKQISDDNENEDD...

XP_057782589.1
MEADRLNSPDTSAVTFEVLGHQLHFAQDPNSKHLGTTVWDASMVFAKFLEKNCRKGRFSPSKLKGKRVIELGAGCGVAGFGMALLGCDVVSTDQTEVLPLLMRNAERNTSRILQTLPDPDSFGSIQVAELNWGNADHIRAVEPPFDYIIGTDVVYAEHLLEPLLQTILSLSGPRTTILLGYELRSTNVHDQMLELWKSNFQVKSVPKSKMHSLYQHPSIQLFMMSPKPSGCKVDETDCSGEEIKSEETKQISDDNENEDD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器