Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G000964

染色体: Chr08 坐标: 7175200-7178593 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G000964
名称SmilChr08G000964
描述lactoylglutathione lyase
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向7175200 - 7178593 / -

ID 对照

NCBI Gene IDLOC131000606
GeneID131000606
locus_tag-
NCBI NameLOC131000606
原始查询SmilChr08G000964

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述lactoylglutathione lyase
产物lactoylglutathione lyase
ArabidopsisAT1G08110 (AT1G08110)
lactoylglutathione lyase family protein / glyoxalase I family protein [Source:NCBI gene (formerly Entrezgene);Acc:837330]
identity=78.5; qcov=0.984; evalue=6.52e-104; confidence=high
RiceOs05g0295800 (GLYI8)
-
identity=77.5; qcov=0.989; evalue=3.19e-108; confidence=high
GOGO:0004462 (lactoylglutathione lyase activity); GO:0046872 (metal ion binding)
KEGGsmil00620 (Pyruvate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
PfamPF00903 (Glyoxalase); PF13669 (Glyoxalase_4)
InterPro-
eggNOG-
NRGeneID:131000606

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Chloroplast 叶绿体 1.00000 XP_057782599.1
2 Chloroplast stroma 叶绿体基质 1.00000 XP_057782599.1
3 Cytoplasm 细胞质 0.80000 XP_057782601.1
4 Cytosol 细胞质基质 0.80000 XP_057782601.1
5 Nucleus 细胞核 0.00000 XP_057782599.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:7176849 C T EMS_canonical_SNV CDS_variant 1 B104
Chr8:7176864 G A EMS_canonical_SNV CDS_variant 5 B111,B8,C27,C57,C84
Chr8:7178322 G A EMS_canonical_SNV CDS_variant 2 B72,C29
Chr8:7178354 C T EMS_canonical_SNV CDS_variant 4 A14,B86,C22,C82

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057782599.1
226 aa
N
1
113
226
Glyoxalase
Glyoxalase_4
C
PF00903 Glyoxalase 68-211 aa PF13669 Glyoxalase_4 69-193 aa
XP_057782601.1
184 aa
N
1
92
184
Glyoxalase
Glyoxalase_4
C
PF00903 Glyoxalase 26-169 aa PF13669 Glyoxalase_4 27-151 aa
XP_057782602.1
184 aa
N
1
92
184
Glyoxalase
Glyoxalase_4
C
PF00903 Glyoxalase 26-169 aa PF13669 Glyoxalase_4 27-151 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057782599.1 Pfam PF00903 Glyoxalase Domain 68 211 1.7e-27 96.9 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
XP_057782599.1 Pfam PF13669 Glyoxalase_4 Family 69 193 2.3e-06 28.6 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
XP_057782601.1 Pfam PF00903 Glyoxalase Domain 26 169 9.2e-28 97.8 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
XP_057782601.1 Pfam PF13669 Glyoxalase_4 Family 27 151 1.2e-06 29.5 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
XP_057782602.1 Pfam PF00903 Glyoxalase Domain 26 169 9.2e-28 97.8 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
XP_057782602.1 Pfam PF13669 Glyoxalase_4 Family 27 151 1.2e-06 29.5 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057926618.1
TTTGGGTGATAGGAATTGGTGATCGTCAACGTTTTCAAGAACATGAGTTGCTTGGCTTGCTGCCCCATTTCCACTGCGTAGTACTATCCCAGAACTCGCGGTGGTCCAGTATCTTCCTTCACTGCCCTCTTCCTAAAGGTATGTTTTTAATCAGCCCAGAAGATTTATATCAAGAACTAGCGTGATGGCGTCCAAAGAATCTGCTGACAACAATCCAGGACTCCAAGCTTCTCTGGATGAGGCCACCAAAGGCTATTTCT...
XM_057926616.1
CAAGAACATGAGTTGCTTGGCTTGCTGCCCCATTTCCACTGCGTAGTACTATCCCAGAACTCGCGGTGGTCCAGTATCTTCCTTCACTGCCCTCTTCCTAAAGGTATGTATGTACTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCAAAAATAATATTCGTATGCTATGGCTACTTCACTTGCCGCCGCCGCCCATCTCAGGCCGCCCCTTTTATCTCAACTTCCCCCACTCTTCACTCTCAGACCCAAGGTTTTTAATC...

CDS

3 records

下载 CDS FASTA
LOC131000606
ATGGCTACTTCACTTGCCGCCGCCGCCCATCTCAGGCCGCCCCTTTTATCTCAACTTCCCCCACTCTTCACTCTCAGACCCAAGGTTTTTAATCAGCCCAGAAGATTTATATCAAGAACTAGCGTGATGGCGTCCAAAGAATCTGCTGACAACAATCCAGGACTCCAAGCTTCTCTGGATGAGGCCACCAAAGGCTATTTCTTGCAGCAAACTATGCTTCGGGTGAAGGACCCAAAAGTCAGTCTTGACTTCTACTCTCG...
LOC131000606
ATGGCGTCCAAAGAATCTGCTGACAACAATCCAGGACTCCAAGCTTCTCTGGATGAGGCCACCAAAGGCTATTTCTTGCAGCAAACTATGCTTCGGGTGAAGGACCCAAAAGTCAGTCTTGACTTCTACTCTCGAATATTGGGGATGTCGTTGCTTAAGAGGCTGGATTTTGAGGAGTTGAAGTTTACCTTGTACTTCTTGGGATATGAGGACACTTCGTCAGCTCCCAGTGATCCCATTGAGCGCACAACCTGGACATT...

Protein

3 records

下载 Protein FASTA
XP_057782599.1
MATSLAAAAHLRPPLLSQLPPLFTLRPKVFNQPRRFISRTSVMASKESADNNPGLQASLDEATKGYFLQQTMLRVKDPKVSLDFYSRILGMSLLKRLDFEELKFTLYFLGYEDTSSAPSDPIERTTWTFSQKATLELTHNWGTESDPEFKGHHNGNSEPRGFGHIGITVDDVYKACKRFESLGVEFVKKPDDGKIKDIAFIKDPDGYWIEIFDTKTIAKTTSKAAV
XP_057782601.1
MASKESADNNPGLQASLDEATKGYFLQQTMLRVKDPKVSLDFYSRILGMSLLKRLDFEELKFTLYFLGYEDTSSAPSDPIERTTWTFSQKATLELTHNWGTESDPEFKGHHNGNSEPRGFGHIGITVDDVYKACKRFESLGVEFVKKPDDGKIKDIAFIKDPDGYWIEIFDTKTIAKTTSKAAV

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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