当前解析结果
SmilChr08G000966| 统一新 Gene ID | SmilChr08G000966 |
|---|---|
| 名称 | SmilChr08G000966 |
| 描述 | uncharacterized SmilChr08G000966 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 7188159 - 7189853 / - |
| NCBI Gene ID | LOC130998003 |
|---|---|
| GeneID | 130998003 |
| locus_tag | - |
| NCBI Name | LOC130998003 |
| 原始查询 | SmilChr08G000966 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os09g0545250; species=rice; confidence=weak |
| 产物 | hit=Os09g0545250; species=rice; confidence=weak |
| Arabidopsis | AT3G24255 (AT3G24255)RNA-directed DNA polymerase (reverse transcriptase)-related family protein [Source:NCBI gene (formerly Entrezgene);Acc:822013] identity=27.2; qcov=0.381; evalue=1.19e-12; confidence=low |
| Rice | Os09g0545250- identity=42.7; qcov=0.285; evalue=7.35e-23; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998003 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057779425.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057779425.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057779425.1 |
| 4 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057779425.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057779425.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:7188163 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A14,B86,C18 |
Chr8:7188167 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C18 |
Chr8:7188194 |
C |
CG |
1bp_insertion | frameshift_variant | 17 | A3,A6,B128,B140,B30,B31,B45,B77,B90,B92,C32,C52,C58,C68,C71,C82,C87 |
Chr8:7188216 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B30,B50,B63,C60,C77 |
Chr8:7188247 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B68 |
Chr8:7188257 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
Chr8:7188273 |
AAT |
A |
2bp_deletion | frameshift_variant | 1 | D4 |
Chr8:7188273 |
AAT |
A |
2bp_deletion | CDS_variant | 1 | D4 |
Chr8:7188541 |
G |
A |
EMS_canonical_SNV | stop_gained | 20 | A6,B119,B130,B16,B27,B49,B51,B52,B6,B69,B95,C19,C28,C41,C62,C67,C73,C76,C81,D6 |
Chr8:7188555 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B66,B8,C19 |
Chr8:7188612 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B100,B68 |
Chr8:7188616 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C19 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。