Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001012`

染色体: Chr08 坐标: 7603145-7607790 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001012`
名称	SmilChr08G001012
描述	uncharacterized SmilChr08G001012
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	7603145 - 7607790 / `+`

ID 对照

NCBI Gene ID	`LOC131000558`
GeneID	`131000558`
locus_tag	`-`
NCBI Name	`LOC131000558`
原始查询	`SmilChr08G001012`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	GATA transcription factor 11 [Source:NCBI gene (formerly Entrezgene);Acc:837316]; symbol=GATA11; hit=AT1G08010; species=arabidopsis; confidence=weak
产物	GATA transcription factor 11 [Source:NCBI gene (formerly Entrezgene);Acc:837316]; symbol=GATA11; hit=AT1G08010; species=arabidopsis; confidence=weak
Arabidopsis	`AT1G08010` (GATA11) GATA transcription factor 11 [Source:NCBI gene (formerly Entrezgene);Acc:837316] identity=70; qcov=0.135; evalue=7.75e-33; confidence=weak
Rice	`Os10g0557600` (OsGATA7) - identity=69.3; qcov=0.145; evalue=5.79e-30; confidence=weak
GO	GO:0006355 (regulation of DNA-templated transcription); GO:0008270 (zinc ion binding); GO:0043565 (sequence-specific DNA binding)
KEGG	-
Pfam	PF00320 (GATA)
InterPro	-
eggNOG	-
NR	GeneID:131000558

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057782528.1`
2	Chromosome	染色体	0.20000	`XP_057782530.1`
3	Centromere	着丝粒	0.00000	`XP_057782528.1`
4	Chromatin	染色质	0.00000	`XP_057782528.1`
5	Telomere	端粒	0.00000	`XP_057782528.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:7604543`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B72
`Chr8:7606744`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B39,B61,C10,C60,C72
`Chr8:7606893`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B109,C23,C31
`Chr8:7606914`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B109,C23,C31
`Chr8:7606962`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C39
`Chr8:7607008`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B68,C69
`Chr8:7607115`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B112

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782528.1

590 aa

295

590

GATA

PF00320 GATA 217-250 aa PF00320 GATA 518-552 aa

XP_057782529.1

590 aa

295

590

GATA

PF00320 GATA 217-250 aa PF00320 GATA 518-552 aa

XP_057782530.1

518 aa

259

518

GATA

PF00320 GATA 145-178 aa PF00320 GATA 446-480 aa

XP_057782531.1

518 aa

259

518

GATA

PF00320 GATA 145-178 aa PF00320 GATA 446-480 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782528.1`	Pfam	`PF00320`	GATA	Domain	217	250	3.2e-31	107.3	GATA zinc finger
`XP_057782528.1`	Pfam	`PF00320`	GATA	Domain	518	552	3.2e-31	107.3	GATA zinc finger
`XP_057782529.1`	Pfam	`PF00320`	GATA	Domain	217	250	3.2e-31	107.3	GATA zinc finger
`XP_057782529.1`	Pfam	`PF00320`	GATA	Domain	518	552	3.2e-31	107.3	GATA zinc finger
`XP_057782530.1`	Pfam	`PF00320`	GATA	Domain	145	178	2.3e-31	107.8	GATA zinc finger
`XP_057782530.1`	Pfam	`PF00320`	GATA	Domain	446	480	2.3e-31	107.8	GATA zinc finger
`XP_057782531.1`	Pfam	`PF00320`	GATA	Domain	145	178	2.3e-31	107.8	GATA zinc finger
`XP_057782531.1`	Pfam	`PF00320`	GATA	Domain	446	480	2.3e-31	107.8	GATA zinc finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057926545.1
ACAGATTGCACAACAAAAACCTCCAACTCTTGAGGGAAAATAAAACAGAGGAAAAAAATCTGCGCCTATTTCAATCTTCTTCTCACCTTATCTATTAGTGTTTGTTTTTTGTGTTTTAATTTCTTCCCTCCATAGACAGGGTTTTGATAAGGGTTTATCTACGGCTACATACTCAAGATTGAAGATTCTATGAGAGTCCTATTCTGAATATTCCCATGTCCGCGCCGAGATATTGAAGCGAGTTGGGAACTTGGTGAATT...

XM_057926547.1
AATAAAACAGAGGAAAAAAATCTGCGCCTATTTCAATCTTCTTCTCACCTTATCTATTAGTGTTTGTTTTTTGTGTTTTAATTTCTTCCCTCCATAGACAGGGTTTTGATAAGGGTTTATCTACGGCTACATACTCAAGATTGAAGATTCTATGAGAGTCCTATTCTGAATATTCCCATGTCCGCGCCGAGATATTGAAGCGAGTTGGGAACTTGGTGAATTTACTCAAAATAGTGTTCCAAATACACACCTATTTTGGA...

CDS

4 records

下载 CDS FASTA

LOC131000558
ATGAGCATGGTTGGCAATAGTTTGGATCCGGATGAGGAGTATGATGCCTTGTTCAATATTCTGGACTTTCCTATTGAATGCTTGGAAGGGAATGAAGTTGCAGCCGATTGGGATAGTAGCAATGCACAATTTCTTGGGCCTATTCCTTCTAGTGTGCTAATGGAGCAACCGATGATGTCCAATGAGGAATTTAATGTTCCTAATTTGTTTCCTCGACCAGTTGCTCCTATTGCTGCAGCTTCAAAGTTAAAGCAGCTGCA...

Protein

4 records

下载 Protein FASTA

XP_057782528.1
MSMVGNSLDPDEEYDALFNILDFPIECLEGNEVAADWDSSNAQFLGPIPSSVLMEQPMMSNEEFNVPNLFPRPVAPIAAASKLKQLHEHVDTSGLCIPRQRKFAKVQESGSFHTQSPVSVLESSSSCLREKSLSIKSEHAVPARSRSKRVRYSGINPWLLAAHELSTSKRTSNAGRSTENRKRLFLQPVSIDLMRKSPENVENSLTVPDPAHQVKKCAHCQSTKTPLWREGPLGPKTLCNACGVQYRSGRLFPEYRPAAS...

XP_057782529.1
MSMVGNSLDPDEEYDALFNILDFPIECLEGNEVAADWDSSNAQFLGPIPSSVLMEQPMMSNEEFNVPNLFPRPVAPIAAASKLKQLHEHVDTSGLCIPRQRKFAKVQESGSFHTQSPVSVLESSSSCLREKSLSIKSEHAVPARSRSKRVRYSGINPWLLAAHELSTSKRTSNAGRSTENRKRLFLQPVSIDLMRKSPENVENSLTVPDPAHQVKKCAHCQSTKTPLWREGPLGPKTLCNACGVQYRSGRLFPEYRPAAS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器