当前解析结果
SmilChr08G001021| 统一新 Gene ID | SmilChr08G001021 |
|---|---|
| 名称 | SmilChr08G001021 |
| 描述 | vacuolar fusion protein MON1 homolog |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 7732829 - 7739014 / - |
| NCBI Gene ID | LOC131000546 |
|---|---|
| GeneID | 131000546 |
| locus_tag | - |
| NCBI Name | LOC131000546 |
| 原始查询 | SmilChr08G001021 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | vacuolar fusion protein MON1 homolog |
| 产物 | vacuolar fusion protein MON1 homolog |
| Arabidopsis | AT2G28390 (AT2G28390)SAND family protein [Source:NCBI gene (formerly Entrezgene);Acc:817387] identity=62; qcov=0.986; evalue=0; confidence=high |
| Rice | Os01g0976000 (MON1)- identity=68.3; qcov=0.795; evalue=0; confidence=high |
| GO | GO:0006623 (protein targeting to vacuole); GO:0016192 (vesicle-mediated transport) |
| KEGG | smil04145 (Phagocytosis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF19036 (Fuz_longin_1); PF19037 (Fuz_longin_2); PF19038 (Fuz_longin_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000546 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 0.80000 | XP_057782504.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057782504.1 |
| 3 | Trans-golgi network | Trans-golgi network | 0.40000 | XP_057782504.1 |
| 4 | Cytoplasm | 细胞质 | 0.20000 | XP_057782504.1 |
| 5 | Vesicle | 囊泡 | 0.20000 | XP_057782504.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:7734163 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B66,B8 |
Chr8:7734424 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A14,B66,B8,D11 |
Chr8:7734485 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B139,B26,D11 |
Chr8:7734488 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B139,B26 |
Chr8:7734552 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B73 |
Chr8:7734763 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A14,A25,C5,C79,D10 |
Chr8:7734985 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C15 |
Chr8:7736136 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C70 |
Chr8:7736182 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D4 |
Chr8:7736191 |
A |
AC |
1bp_insertion | frameshift_variant | 16 | A20,A23,B106,B111,B128,B132,B20,B37,B4,B44,B47,B49,B73,B95,C6,D3 |
Chr8:7736988 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A15,C65 |
Chr8:7737214 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C75 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057782504.1PF19036
Fuz_longin_1 213-334 aa
PF19037
Fuz_longin_2 373-466 aa
PF19038
Fuz_longin_3 534-634 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057782504.1 |
Pfam | PF19036 |
Fuz_longin_1 | Domain | 213 | 334 | 1.7e-30 | 106.5 | First Longin domain of FUZ, MON1 and HPS1 |
XP_057782504.1 |
Pfam | PF19037 |
Fuz_longin_2 | Domain | 373 | 466 | 5.4e-24 | 85.0 | Second Longin domain of FUZ, MON1 and HPS1 |
XP_057782504.1 |
Pfam | PF19038 |
Fuz_longin_3 | Domain | 534 | 634 | 7.3e-21 | 75.5 | Third Longin domain of FUZ, MON1 and HPS1 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。