Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001031`

染色体: Chr08 坐标: 7845604-7851019 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001031`
名称	SmilChr08G001031
描述	homeobox protein BEL1 homolog
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	7845604 - 7851019 / `+`

ID 对照

NCBI Gene ID	`LOC131000534`
GeneID	`131000534`
locus_tag	`-`
NCBI Name	`LOC131000534`
原始查询	`SmilChr08G001031`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	homeobox protein BEL1 homolog
产物	homeobox protein BEL1 homolog
Arabidopsis	`AT2G27990` (BLH8) BEL1-like homeodomain 8 [Source:NCBI gene (formerly Entrezgene);Acc:817343] identity=41.4; qcov=0.606; evalue=1.29e-86; confidence=medium
Rice	`Os05g0455200` (RI) - identity=46.8; qcov=0.402; evalue=4.62e-78; confidence=low
GO	GO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0006357 (regulation of transcription by RNA polymerase II)
KEGG	-
Pfam	PF00046 (Homeodomain); PF05920 (Homeobox_KN); PF07526 (POX)
InterPro	-
eggNOG	-
NR	GeneID:131000534

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057782485.1`
2	Chromosome	染色体	0.00000	`XP_057782485.1`
3	Centromere	着丝粒	0.00000	`XP_057782485.1`
4	Chromatin	染色质	0.00000	`XP_057782485.1`
5	Telomere	端粒	0.00000	`XP_057782485.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:7847000`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B19,B8,C33,C78
`Chr8:7847045`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B122,B24,C10,C65
`Chr8:7847071`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C40
`Chr8:7847117`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C2,C21
`Chr8:7847145`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C40
`Chr8:7847813`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B65,B77
`Chr8:7848039`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B126,C57
`Chr8:7849843`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B124
`Chr8:7849999`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:7850482`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B42,B43
`Chr8:7850521`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A9,B101,C69
`Chr8:7850547`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B71

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782485.1

729 aa

364

729

POX

Homeobox_KN

Homeodomain

PF07526 POX 314-469 aa PF05920 Homeobox_KN 541-580 aa PF00046 Homeodomain 548-580 aa

XP_057782486.1

729 aa

364

729

POX

Homeobox_KN

Homeodomain

PF07526 POX 314-469 aa PF05920 Homeobox_KN 541-580 aa PF00046 Homeodomain 548-580 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782485.1`	Pfam	`PF07526`	POX	Domain	314	469	3.5e-39	135.1	Associated with HOX
`XP_057782485.1`	Pfam	`PF05920`	Homeobox_KN	Family	541	580	1.1e-19	70.7	Homeobox KN domain
`XP_057782485.1`	Pfam	`PF00046`	Homeodomain	Domain	548	580	1.2e-06	28.9	Homeodomain
`XP_057782486.1`	Pfam	`PF07526`	POX	Domain	314	469	3.5e-39	135.1	Associated with HOX
`XP_057782486.1`	Pfam	`PF05920`	Homeobox_KN	Family	541	580	1.1e-19	70.7	Homeobox KN domain
`XP_057782486.1`	Pfam	`PF00046`	Homeodomain	Domain	548	580	1.2e-06	28.9	Homeodomain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057926502.1
ATAAATTGTTAATAATCGAGTACTGTATTAATTTGGTTATGGTTGAGAAAATAATTTGAATTTAAGTCTATATATTTGAAAAGCCAAACGGCACTGAGCAGCAATCATTGTCCTACACCTCAACTCATACAGCTTGCCTAGCCCTGCCTGCTCTCTTCCACTCCTACCCCACAACAACTCTAACTTGGAATCTTTGCCGGAAAATCCATCGGAAAATCCACACGCTCCTTTTCTTCGCTTAGATTTTCGATTTGGATTGA...

XM_057926503.1
TTGAAAAGCCAAACGGCACTGAGCAGCAATCATTGTCCTACACCTCAACTCATACAGCTTGCCTAGCCCTGCCTGCTCTCTTCCACTCCTACCCCACAACAACTCTAACTTGGAATCTTTGCCGGAAAATCCATCGGAAAATCCACACGCTCCTTTTCTTCGCTTAGATTTTCGATTTGGATTGATTGAAGCAGACTCGGATTTCTCACAGTTTTCCCCTCAGCTTTTGTCCACATTTCACTGGGTCTTGGATTACTTTT...

CDS

2 records

下载 CDS FASTA

LOC131000534
ATGAACAGCTATAGGCCTGATCTCCACATCGCGCAGCAAAGCCGTCGAGACAAGTTGAGAATTCAGCAAGATATTTACGCCAACAATTTCCCACACGATGCCTTAAACTTCGACTCCTCCGCCGACGTCCGTAGCTGTCGGAACGGGAACATATGCTACGATCCGTCGGAGCTCTGCCCGGAGATGATCAATTTCTCTGTGAACCCACTGCTCAAGGACGGCTTGATGGGGGCCGAGAAACGGGCCCCCTTTCCGACGTC...

Protein

2 records

下载 Protein FASTA

XP_057782485.1
MNSYRPDLHIAQQSRRDKLRIQQDIYANNFPHDALNFDSSADVRSCRNGNICYDPSELCPEMINFSVNPLLKDGLMGAEKRAPFPTSFSPSATVSSSDPQYFSTCDWVANHSSIYANPISALDVKPNYLGYDQDMNGAASSLYQNALQDLVSSSNNVRSFGLEFASLRHKSSGEAGHGPWVVGGSELMLLPDQMRLKTQSGLITRPVDGCSQWSSELEFAAPKDLDRDHSNTQALSLSLSSVPSPKVHEAQITERDFQTR...

XP_057782486.1
MNSYRPDLHIAQQSRRDKLRIQQDIYANNFPHDALNFDSSADVRSCRNGNICYDPSELCPEMINFSVNPLLKDGLMGAEKRAPFPTSFSPSATVSSSDPQYFSTCDWVANHSSIYANPISALDVKPNYLGYDQDMNGAASSLYQNALQDLVSSSNNVRSFGLEFASLRHKSSGEAGHGPWVVGGSELMLLPDQMRLKTQSGLITRPVDGCSQWSSELEFAAPKDLDRDHSNTQALSLSLSSVPSPKVHEAQITERDFQTR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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