当前解析结果
SmilChr08G001035| 统一新 Gene ID | SmilChr08G001035 |
|---|---|
| 名称 | SmilChr08G001035 |
| 描述 | lysM domain receptor-like kinase 4 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 7875601 - 7877358 / - |
| NCBI Gene ID | LOC130998013 |
|---|---|
| GeneID | 130998013 |
| locus_tag | - |
| NCBI Name | LOC130998013 |
| 原始查询 | SmilChr08G001035 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | lysM domain receptor-like kinase 4 |
| 产物 | lysM domain receptor-like kinase 4 |
| Arabidopsis | AT2G23770 (LYK4)protein kinase family protein / peptidoglycan-binding LysM domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:816909] identity=31.1; qcov=1.06; evalue=4.6e-67; confidence=low |
| Rice | Os06g0625200 (OsLysM-RLK6)- identity=28.4; qcov=1.03; evalue=4.15e-44; confidence=low |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF01476 (LysM); PF07714 (PK_Tyr_Ser-Thr); PF23446 (LysM1_NFP_LYK); PF23472 (LysM2_CERK1_LYK3_4_5); PF23473 (LysM3_LYK4_5) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998013 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057779433.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057779433.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057779433.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057779433.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057779433.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:7875984 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B140,C82 |
Chr8:7876022 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C61 |
Chr8:7876042 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A11,A3,B22,C58 |
Chr8:7876454 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B113,B16,B88 |
Chr8:7876786 |
G |
GT |
1bp_insertion | frameshift_variant | 3 | B35,B7,C61 |
Chr8:7876786 |
G |
GT |
1bp_insertion | CDS_variant | 3 | B35,B7,C61 |
Chr8:7876914 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C61 |
Chr8:7876963 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C15 |
Chr8:7877253 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C61 |
Chr8:7877254 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C65,C82 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057779433.1PF23446
LysM1_NFP_LYK 48-106 aa
PF01476
LysM 63-101 aa
PF23472
LysM2_CERK1_LYK3_4_5 111-165 aa
PF23473
LysM3_LYK4_5 181-230 aa
PF01476
LysM 189-229 aa
PF07714
PK_Tyr_Ser-Thr 382-453 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779433.1 |
Pfam | PF23446 |
LysM1_NFP_LYK | Domain | 48 | 106 | 6.8e-21 | 75.6 | NFP/LYK LysM1 domain |
XP_057779433.1 |
Pfam | PF01476 |
LysM | Domain | 63 | 101 | 1.6e-11 | 44.7 | LysM domain |
XP_057779433.1 |
Pfam | PF23472 |
LysM2_CERK1_LYK3_4_5 | Domain | 111 | 165 | 6.8e-13 | 49.0 | LYK3/4/5 LysM2 domain |
XP_057779433.1 |
Pfam | PF23473 |
LysM3_LYK4_5 | Domain | 181 | 230 | 8.8e-11 | 42.5 | LYK4/5 LysM3 domain |
XP_057779433.1 |
Pfam | PF01476 |
LysM | Domain | 189 | 229 | 1.6e-11 | 44.7 | LysM domain |
XP_057779433.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 382 | 453 | 5.4e-14 | 52.8 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。