Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001037`

染色体: Chr08 坐标: 7901817-7906952 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001037`
名称	SmilChr08G001037
描述	E3 ubiquitin-protein ligase WAV3-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	7901817 - 7906952 / `+`

ID 对照

NCBI Gene ID	`LOC131000539`
GeneID	`131000539`
locus_tag	`-`
NCBI Name	`LOC131000539`
原始查询	`SmilChr08G001037`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	E3 ubiquitin-protein ligase WAV3-like
产物	E3 ubiquitin-protein ligase WAV3-like
Arabidopsis	`AT5G60710` (AT5G60710) Zinc finger (C3HC4-type RING finger) family protein [Source:NCBI gene (formerly Entrezgene);Acc:836192] identity=59.6; qcov=0.998; evalue=0; confidence=high
Rice	`Os02g0806700` - identity=58.6; qcov=0.994; evalue=0; confidence=high
GO	-
KEGG	-
Pfam	PF00092 (VWA); PF00097 (zf-C3HC4); PF05762 (VWA_CoxE); PF12861 (zf-ANAPC11); PF13519 (VWA_2); PF13639 (zf-RING_2); PF13768 (VWA_3); PF14624 (Vwaint); PF17123 (zf-RING_11)
InterPro	-
eggNOG	-
NR	GeneID:131000539

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.60000	`XP_057782493.1`
2	Nucleus	细胞核	0.40000	`XP_057782495.1`
3	Cytoplasm	细胞质	0.40000	`XP_057782495.1`
4	Cytosol	细胞质基质	0.20000	`XP_057782495.1`
5	Chromosome	染色体	0.00000	`XP_057782493.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:7906014`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B44

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782493.1

726 aa

363

726

zf-RING_2

zf-RING_11

zf-C3HC4

VWA_CoxE

VWA_3

VWA

VWA_2

Vwaint

PF13639 zf-RING_2 83-128 aa PF17123 zf-RING_11 84-113 aa PF00097 zf-C3HC4 84-127 aa PF05762 VWA_CoxE 269-386 aa PF13768 VWA_3 274-445 aa PF00092 VWA 274-456 aa PF13519 VWA_2 275-381 aa PF14624 Vwaint 626-698 aa

XP_057782494.1

725 aa

362

725

zf-RING_2

zf-RING_11

zf-C3HC4

VWA_CoxE

VWA_3

VWA

VWA_2

Vwaint

PF13639 zf-RING_2 82-127 aa PF17123 zf-RING_11 83-112 aa PF00097 zf-C3HC4 83-126 aa PF05762 VWA_CoxE 268-385 aa PF13768 VWA_3 273-444 aa PF00092 VWA 273-455 aa PF13519 VWA_2 274-380 aa PF14624 Vwaint 625-697 aa

XP_057782495.1

652 aa

326

652

zf-RING_2

zf-RING_11

zf-C3HC4

zf-ANAPC11

VWA_CoxE

VWA_3

VWA

VWA_2

Vwaint

PF13639 zf-RING_2 9-54 aa PF17123 zf-RING_11 10-39 aa PF00097 zf-C3HC4 10-53 aa PF12861 zf-ANAPC11 13-58 aa PF05762 VWA_CoxE 195-312 aa PF13768 VWA_3 200-371 aa PF00092 VWA 200-382 aa PF13519 VWA_2 201-307 aa PF14624 Vwaint 552-624 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782493.1`	Pfam	`PF13639`	zf-RING_2	Domain	83	128	1.5e-06	29.1	Ring finger domain
`XP_057782493.1`	Pfam	`PF17123`	zf-RING_11	Domain	84	113	1.9e-07	31.4	RING-like zinc finger
`XP_057782493.1`	Pfam	`PF00097`	zf-C3HC4	Domain	84	127	1.3e-06	28.8	Zinc finger, C3HC4 type (RING finger)
`XP_057782493.1`	Pfam	`PF05762`	VWA_CoxE	Domain	269	386	1.9e-09	38.0	VWA domain containing CoxE-like protein
`XP_057782493.1`	Pfam	`PF13768`	VWA_3	Domain	274	445	6.1e-20	72.6	von Willebrand factor type A domain
`XP_057782493.1`	Pfam	`PF00092`	VWA	Domain	274	456	8.4e-22	78.9	von Willebrand factor type A domain
`XP_057782493.1`	Pfam	`PF13519`	VWA_2	Domain	275	381	3.1e-18	67.0	von Willebrand factor type A domain
`XP_057782493.1`	Pfam	`PF14624`	Vwaint	Domain	626	698	1.3e-19	70.9	VWA / Hh protein intein-like
`XP_057782494.1`	Pfam	`PF13639`	zf-RING_2	Domain	82	127	1.5e-06	29.1	Ring finger domain
`XP_057782494.1`	Pfam	`PF17123`	zf-RING_11	Domain	83	112	1.9e-07	31.4	RING-like zinc finger
`XP_057782494.1`	Pfam	`PF00097`	zf-C3HC4	Domain	83	126	1.3e-06	28.8	Zinc finger, C3HC4 type (RING finger)
`XP_057782494.1`	Pfam	`PF05762`	VWA_CoxE	Domain	268	385	1.9e-09	38.0	VWA domain containing CoxE-like protein
`XP_057782494.1`	Pfam	`PF13768`	VWA_3	Domain	273	444	6.4e-20	72.5	von Willebrand factor type A domain
`XP_057782494.1`	Pfam	`PF00092`	VWA	Domain	273	455	8.3e-22	78.9	von Willebrand factor type A domain
`XP_057782494.1`	Pfam	`PF13519`	VWA_2	Domain	274	380	3.1e-18	67.1	von Willebrand factor type A domain
`XP_057782494.1`	Pfam	`PF14624`	Vwaint	Domain	625	697	1.3e-19	70.9	VWA / Hh protein intein-like
`XP_057782495.1`	Pfam	`PF13639`	zf-RING_2	Domain	9	54	1.2e-06	29.4	Ring finger domain
`XP_057782495.1`	Pfam	`PF17123`	zf-RING_11	Domain	10	39	1.6e-07	31.6	RING-like zinc finger
`XP_057782495.1`	Pfam	`PF00097`	zf-C3HC4	Domain	10	53	1.2e-06	29.0	Zinc finger, C3HC4 type (RING finger)
`XP_057782495.1`	Pfam	`PF12861`	zf-ANAPC11	Domain	13	58	9.4e-06	26.3	Anaphase-promoting complex subunit 11 RING-H2 finger
`XP_057782495.1`	Pfam	`PF05762`	VWA_CoxE	Domain	195	312	1.6e-09	38.2	VWA domain containing CoxE-like protein
`XP_057782495.1`	Pfam	`PF13768`	VWA_3	Domain	200	371	5.1e-20	72.8	von Willebrand factor type A domain
`XP_057782495.1`	Pfam	`PF00092`	VWA	Domain	200	382	6.6e-22	79.3	von Willebrand factor type A domain
`XP_057782495.1`	Pfam	`PF13519`	VWA_2	Domain	201	307	2.6e-18	67.3	von Willebrand factor type A domain
`XP_057782495.1`	Pfam	`PF14624`	Vwaint	Domain	552	624	1.1e-19	71.1	VWA / Hh protein intein-like

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057926510.1
AATATAGATTTGTCGAAACGTAAAGCCATTGGTTACCGTGTTCAAAGCCCATCCCAAAAACCGGAGAGGAAAAGCGCACACACAAATAAACACACACAAAATTCCACCCATGGAGATCTCTTTTCTGCATAAATCGTCACCCATTTCGCAATTCCTTCTGTTTCCGGAAGAGGAGAAATCCATACATGCGTGCATGCTTGTTTGATATACCTCTGCTTTCTTCAAATTTCTGTATCCATATATGTGTAATTATCGGTTTT...

XM_057926511.1
TATAGATTTGTCGAAACGTAAAGCCATTGGTTACCGTGTTCAAAGCCCATCCCAAAAACCGGAGAGGAAAAGCGCACACACAAATAAACACACACAAAATTCCACCCATGGAGATCTCTTTTCTGCATAAATCGTCACCCATTTCGCAATTCCTTCTGTTTCCGGAAGAGGAGAAATCCATACATGCGTGCATGCTTGTTTGATATACCTCTGCTTTCTTCAAATTTCTGTATCCATATATGTGTAATTATCGGTTTTGA...

CDS

3 records

下载 CDS FASTA

LOC131000539
ATGGGCGGGAGCAAATGGACGAAAGCCAGGATTGCGCTAGGGTTGAAGTTGAATTCCTGCCTCTACGTGCCGAGAACGGTTGAGGATTCTCCGCCGCCGCCGCCGCCGGCGAGATCTTCCGGAGCCGCCTCATTGTCTCCGACGACGCCGCGGGACTCGGATCACCGGGTGCAAATGCCTACTACGCCCACGCCATCTTCTTCCGGCCTCCGCTTGCCTAAGCAATCCTCCAAATCCTCCAAGAAGATTTGTGCAATATG...

Protein

3 records

下载 Protein FASTA

XP_057782493.1
MGGSKWTKARIALGLKLNSCLYVPRTVEDSPPPPPPARSSGAASLSPTTPRDSDHRVQMPTTPTPSSSGLRLPKQSSKSSKKICAICLGTMKPGHGHAIFTAECSHSFHFHCIASNVKHGRQSCPVCRAKWKEVPFQSPSADKSNGGDRINNVPWPQDESLMRLVRRIPSPRMDSNRNVSSLFHVVEPDVFDDDDEICGDLPCGTGITNRSSSKPNDDDHFTGAVEVKTYPEVSAVLKSKSHDNFSVLIHLKAPTATAMQ...

XP_057782494.1
MGGSKWTKARIALGLKLNSCLYVPRTVEDSPPPPPPARSSGAASLSPTTPRDSDHRVQMPTTPTPSSSGLRLPKQSSKSSKICAICLGTMKPGHGHAIFTAECSHSFHFHCIASNVKHGRQSCPVCRAKWKEVPFQSPSADKSNGGDRINNVPWPQDESLMRLVRRIPSPRMDSNRNVSSLFHVVEPDVFDDDDEICGDLPCGTGITNRSSSKPNDDDHFTGAVEVKTYPEVSAVLKSKSHDNFSVLIHLKAPTATAMQH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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