当前解析结果
SmilChr08G001046| 统一新 Gene ID | SmilChr08G001046 |
|---|---|
| 名称 | SmilChr08G001046 |
| 描述 | PHD finger protein MALE STERILITY 1-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 7984787 - 7987061 / + |
| NCBI Gene ID | LOC131000547 |
|---|---|
| GeneID | 131000547 |
| locus_tag | - |
| NCBI Name | LOC131000547 |
| 原始查询 | SmilChr08G001046 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | PHD finger protein MALE STERILITY 1-like |
| 产物 | PHD finger protein MALE STERILITY 1-like |
| Arabidopsis | AT5G22260 (MS1)RING/FYVE/PHD zinc finger superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832286] identity=43; qcov=1.01; evalue=2.84e-173; confidence=medium |
| Rice | Os09g0449000 (OsMS1)- identity=42.8; qcov=1.04; evalue=9.01e-169; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | PF00628 (PHD); PF25565 (Ubiquitin_At1g33420); PF25874 (WHD_plant_repro); PF27744 (MS1_N); PF27748 (MS1_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000547 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057782506.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057782506.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057782506.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057782506.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057782506.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:7984952 |
TAC |
T |
2bp_deletion | frameshift_variant | 9 | A15,A20,A7,B16,B75,C13,C29,C43,C70 |
Chr8:7985414 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A2,B38,B39,C76,C79 |
Chr8:7985555 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A11,A3,C58 |
Chr8:7985696 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C41,C63,C67 |
Chr8:7986128 |
GGC |
G |
2bp_deletion | frameshift_variant | 1 | B55 |
Chr8:7986128 |
GGC |
G |
2bp_deletion | CDS_variant | 1 | B55 |
Chr8:7986417 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr8:7986447 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr8:7986518 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B108,B16 |
Chr8:7986653 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C64 |
Chr8:7986880 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | B29 |
Chr8:7986880 |
AC |
A |
1bp_deletion | CDS_variant | 1 | B29 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057782506.1PF27744
MS1_N 221-264 aa
PF27748
MS1_C 276-311 aa
PF25874
WHD_plant_repro 332-411 aa
PF25565
Ubiquitin_At1g33420 484-569 aa
PF00628
PHD 584-628 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057782506.1 |
Pfam | PF27744 |
MS1_N | Domain | 221 | 264 | 2.7e-22 | 79.2 | PHD finger protein MALE STERILITY 1-like, N-terminal domain |
XP_057782506.1 |
Pfam | PF27748 |
MS1_C | Domain | 276 | 311 | 4.4e-08 | 33.1 | PHD finger protein MALE STERILITY 1-like, C-terminal domain |
XP_057782506.1 |
Pfam | PF25874 |
WHD_plant_repro | Domain | 332 | 411 | 6.5e-33 | 113.2 | Winged helix-turn-helix domain in plant reproductive proteins |
XP_057782506.1 |
Pfam | PF25565 |
Ubiquitin_At1g33420 | Domain | 484 | 569 | 8.4e-18 | 64.8 | At1g33420-like, ubiquitin-like domain |
XP_057782506.1 |
Pfam | PF00628 |
PHD | Domain | 584 | 628 | 5.8e-06 | 26.9 | PHD-finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。