Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001055`

染色体: Chr08 坐标: 8075183-8081255 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001055`
名称	SmilChr08G001055
描述	homeobox-leucine zipper protein REVOLUTA-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	8075183 - 8081255 / `-`

ID 对照

NCBI Gene ID	`LOC131000641`
GeneID	`131000641`
locus_tag	`-`
NCBI Name	`LOC131000641`
原始查询	`SmilChr08G001055`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	homeobox-leucine zipper protein REVOLUTA-like
产物	homeobox-leucine zipper protein REVOLUTA-like
Arabidopsis	`AT5G60690` (REV) Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:836190] identity=79.4; qcov=0.983; evalue=0; confidence=high
Rice	`Os10g0480200` (Oshox9) - identity=69.5; qcov=0.983; evalue=0; confidence=high
GO	GO:0003677 (DNA binding); GO:0003700 (DNA-binding transcription factor activity); GO:0008289 (lipid binding)
KEGG	-
Pfam	PF00046 (Homeodomain); PF01852 (START); PF08670 (MEKHLA)
InterPro	-
eggNOG	-
NR	GeneID:131000641

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057782634.1`
2	Cytosol	细胞质基质	1.00000	`XP_057782637.1`
3	Cytoplasm	细胞质	0.80000	`XP_057782634.1`
4	Chromosome	染色体	0.00000	`XP_057782634.1`
5	Centromere	着丝粒	0.00000	`XP_057782634.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:8075417`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B78
`Chr8:8075436`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B113,C48
`Chr8:8075524`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B78,C28
`Chr8:8075644`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B21,B59,C27
`Chr8:8075766`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B61
`Chr8:8076076`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B111,B79,B87
`Chr8:8076080`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B136,B20,C45
`Chr8:8076134`	`TA`	`T`	1bp_deletion	frameshift_variant	1	C12
`Chr8:8076134`	`TA`	`T`	1bp_deletion	CDS_variant	1	C12
`Chr8:8076210`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:8076262`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:8076264`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B119

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782634.1

837 aa

418

837

Homeodomain

START

MEKHLA

PF00046 Homeodomain 24-82 aa PF01852 START 161-368 aa PF08670 MEKHLA 690-836 aa

XP_057782635.1

837 aa

418

837

Homeodomain

START

MEKHLA

PF00046 Homeodomain 24-82 aa PF01852 START 161-368 aa PF08670 MEKHLA 690-836 aa

XP_057782636.1

837 aa

418

837

Homeodomain

START

MEKHLA

PF00046 Homeodomain 24-82 aa PF01852 START 161-368 aa PF08670 MEKHLA 690-836 aa

XP_057782637.1

697 aa

348

697

START

MEKHLA

PF01852 START 21-228 aa PF08670 MEKHLA 550-696 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782634.1`	Pfam	`PF00046`	Homeodomain	Domain	24	82	1.2e-15	57.8	Homeodomain
`XP_057782634.1`	Pfam	`PF01852`	START	Domain	161	368	3.4e-46	157.9	START domain
`XP_057782634.1`	Pfam	`PF08670`	MEKHLA	Domain	690	836	3.2e-44	151.0	MEKHLA domain
`XP_057782635.1`	Pfam	`PF00046`	Homeodomain	Domain	24	82	1.2e-15	57.8	Homeodomain
`XP_057782635.1`	Pfam	`PF01852`	START	Domain	161	368	3.4e-46	157.9	START domain
`XP_057782635.1`	Pfam	`PF08670`	MEKHLA	Domain	690	836	3.2e-44	151.0	MEKHLA domain
`XP_057782636.1`	Pfam	`PF00046`	Homeodomain	Domain	24	82	1.2e-15	57.8	Homeodomain
`XP_057782636.1`	Pfam	`PF01852`	START	Domain	161	368	3.4e-46	157.9	START domain
`XP_057782636.1`	Pfam	`PF08670`	MEKHLA	Domain	690	836	3.2e-44	151.0	MEKHLA domain
`XP_057782637.1`	Pfam	`PF01852`	START	Domain	21	228	6e-46	157.1	START domain
`XP_057782637.1`	Pfam	`PF08670`	MEKHLA	Domain	550	696	2.5e-44	151.3	MEKHLA domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057926653.1
TCATTTCAATCTTTTATTTATAATTCAGTTTTCCTTTTCATTTTATTTAATTAAACAATAGTACTCGTACAGTATGGAATTTCATTTCATTTGGTGGCCTACGCCTACGCTTAGAAACAGAAATACTAATTAAAAAATAAAAAAGTGAATTAATAGAGGAAAAAGAATTGGAGAGGTGCAGGTGCAGGCAGCAGGCAGACGCAGGGGGGGGCACTGCAGCAGTGTGCAAACTCTGCAGTAGCCACCATCATCACCATATA...

XM_057926651.1
TCATTTCAATCTTTTATTTATAATTCAGTTTTCCTTTTCATTTTATTTAATTAAACAATAGTACTCGTACAGTATGGAATTTCATTTCATTTGGTGGCCTACGCCTACGCTTAGAAACAGAAATACTAATTAAAAAATAAAAAAGTGAATTAATAGAGGAAAAAGAATTGGAGAGGTGCAGGTGCAGGCAGCAGGCAGACGCAGGGGGGGGCACTGCAGCAGTGTGCAAACTCTGCAGTAGCCACCATCATCACCATATA...

CDS

4 records

下载 CDS FASTA

LOC131000641
ATGGCTATGGTGGCGCATCATCACCGGGAGGATAGCAGTGGGAGCATTAGCAAGCATCTTGATGCCGGAAAGTATGTCCGTTACACGGCGGAGCAGGTGGAGGCGTTGGAGAGGGTGTATGCCGAGTGTCCCAAGCCCAGCTCTCTACGCCGCCAGCAGCTCATTCGGGAATGCCCTATTCTTTCAAACATTGAACCCAAGCAAATCAAAGTCTGGTTTCAAAATCGGAGGTGTCGAGAGAAGCAGCGGAAGGAATCTAC...

Protein

4 records

下载 Protein FASTA

XP_057782634.1
MAMVAHHHREDSSGSISKHLDAGKYVRYTAEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKESTRLQSVNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMRQHLTPAPTTDASCESAVTTPQHSLRDASNPAGLLSIAEETLTEFLSKATGTAVDWVQMPGMKPGPGSVGIFAISQSCSGVAARACGLVSLEPIKIAEILKDRPTWFRDCRSLEVFTMFPAGNGGTIELLYTQTYA...

XP_057782635.1
MAMVAHHHREDSSGSISKHLDAGKYVRYTAEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKESTRLQSVNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMRQHLTPAPTTDASCESAVTTPQHSLRDASNPAGLLSIAEETLTEFLSKATGTAVDWVQMPGMKPGPGSVGIFAISQSCSGVAARACGLVSLEPIKIAEILKDRPTWFRDCRSLEVFTMFPAGNGGTIELLYTQTYA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器