当前解析结果
SmilChr08G001057| 统一新 Gene ID | SmilChr08G001057 |
|---|---|
| 名称 | SmilChr08G001057 |
| 描述 | vacuolar fusion protein MON1 homolog |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 8114983 - 8121062 / - |
| NCBI Gene ID | LOC131000643 |
|---|---|
| GeneID | 131000643 |
| locus_tag | - |
| NCBI Name | LOC131000643 |
| 原始查询 | SmilChr08G001057 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | vacuolar fusion protein MON1 homolog |
| 产物 | vacuolar fusion protein MON1 homolog |
| Arabidopsis | AT2G28390 (AT2G28390)SAND family protein [Source:NCBI gene (formerly Entrezgene);Acc:817387] identity=61.7; qcov=0.986; evalue=0; confidence=high |
| Rice | Os01g0976000 (MON1)- identity=68.5; qcov=0.795; evalue=0; confidence=high |
| GO | GO:0006623 (protein targeting to vacuole); GO:0016192 (vesicle-mediated transport) |
| KEGG | smil04145 (Phagocytosis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF19036 (Fuz_longin_1); PF19037 (Fuz_longin_2); PF19038 (Fuz_longin_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000643 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 0.80000 | XP_057782639.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057782639.1 |
| 3 | Cytoplasm | 细胞质 | 0.40000 | XP_057782639.1 |
| 4 | Trans-golgi network | Trans-golgi network | 0.40000 | XP_057782639.1 |
| 5 | Vesicle | 囊泡 | 0.20000 | XP_057782639.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:8116537 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A14,B66 |
Chr8:8116598 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B26,C75 |
Chr8:8116601 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B26,C75 |
Chr8:8117694 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A14 |
Chr8:8118306 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B134 |
Chr8:8118321 |
A |
AC |
1bp_insertion | frameshift_variant | 11 | B128,B15,B20,B21,B4,B44,B63,B73,B95,C41,D9 |
Chr8:8118349 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C4 |
Chr8:8119167 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B66,B8 |
Chr8:8120444 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B128,C56,C69 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057782639.1PF19036
Fuz_longin_1 213-334 aa
PF19037
Fuz_longin_2 373-466 aa
PF19038
Fuz_longin_3 534-634 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057782639.1 |
Pfam | PF19036 |
Fuz_longin_1 | Domain | 213 | 334 | 1.7e-30 | 106.5 | First Longin domain of FUZ, MON1 and HPS1 |
XP_057782639.1 |
Pfam | PF19037 |
Fuz_longin_2 | Domain | 373 | 466 | 5.9e-24 | 84.9 | Second Longin domain of FUZ, MON1 and HPS1 |
XP_057782639.1 |
Pfam | PF19038 |
Fuz_longin_3 | Domain | 534 | 634 | 1.2e-21 | 78.0 | Third Longin domain of FUZ, MON1 and HPS1 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。