Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001081`

染色体: Chr08 坐标: 8318054-8323462 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001081`
名称	SmilChr08G001081
描述	beta-galactosidase 8-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	8318054 - 8323462 / `-`

ID 对照

NCBI Gene ID	`LOC131000663`
GeneID	`131000663`
locus_tag	`-`
NCBI Name	`LOC131000663`
原始查询	`SmilChr08G001081`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	beta-galactosidase 8-like
产物	beta-galactosidase 8-like
Arabidopsis	`AT2G28470` (BGAL8) beta-galactosidase 8 [Source:NCBI gene (formerly Entrezgene);Acc:817395] identity=72.4; qcov=0.982; evalue=0; confidence=high
Rice	`Os03g0255100` (OsBgal8) - identity=68; qcov=0.992; evalue=0; confidence=high
GO	GO:0004565 (beta-galactosidase activity); GO:0005618 (cell wall); GO:0005773 (vacuole); GO:0005975 (carbohydrate metabolic process); GO:0030246 (carbohydrate binding)
KEGG	-
Pfam	PF01301 (Glyco_hydro_35); PF02140 (SUEL_Lectin); PF02449 (Glyco_hydro_42); PF17834 (GHD); PF21467 (BetaGal_gal-bd)
InterPro	-
eggNOG	-
NR	GeneID:131000663

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Secreted	分泌到胞外	1.00000	`XP_057782668.1`
2	Vacuole	液泡	0.60000	`XP_057782668.1`
3	Cell wall	细胞壁	0.20000	`XP_057782668.1`
4	Nucleus	细胞核	0.00000	`XP_057782670.1`
5	Chromosome	染色体	0.00000	`XP_057782670.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:8318204`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A18,B108,B41,D3
`Chr8:8318386`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B38,B39,C72
`Chr8:8318469`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:8318959`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A18,B108,B41,D3
`Chr8:8319106`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:8319346`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B7,B71
`Chr8:8319796`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A18,B108,B41,D3
`Chr8:8319966`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:8320994`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B55,C2,C21,C36
`Chr8:8321127`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B36,B68,C74
`Chr8:8321575`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B38,B39,C72
`Chr8:8321620`	`AT`	`A`	1bp_deletion	frameshift_variant	3	B105,B123,B51

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782668.1

846 aa

423

846

Glyco_hydro_35

Glyco_hydro_42

GHD

BetaGal_gal-bd

SUEL_Lectin

PF01301 Glyco_hydro_35 34-338 aa PF02449 Glyco_hydro_42 56-202 aa PF17834 GHD 361-417 aa PF21467 BetaGal_gal-bd 624-712 aa PF02140 SUEL_Lectin 768-845 aa

XP_057782670.1

737 aa

368

737

Glyco_hydro_35

GHD

BetaGal_gal-bd

SUEL_Lectin

PF01301 Glyco_hydro_35 18-229 aa PF17834 GHD 252-308 aa PF21467 BetaGal_gal-bd 515-603 aa PF02140 SUEL_Lectin 659-736 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782668.1`	Pfam	`PF01301`	Glyco_hydro_35	Domain	34	338	7.4e-122	407.6	Glycosyl hydrolases family 35
`XP_057782668.1`	Pfam	`PF02449`	Glyco_hydro_42	Domain	56	202	4e-05	23.9	Beta-galactosidase
`XP_057782668.1`	Pfam	`PF17834`	GHD	Domain	361	417	5.3e-25	87.6	Beta-sandwich domain in beta galactosidase
`XP_057782668.1`	Pfam	`PF21467`	BetaGal_gal-bd	Domain	624	712	6.9e-32	110.1	Beta-galactosidase, galactose-binding domain
`XP_057782668.1`	Pfam	`PF02140`	SUEL_Lectin	Domain	768	845	1.2e-20	74.3	D-galactoside/L-rhamnose binding SUEL lectin domain
`XP_057782670.1`	Pfam	`PF01301`	Glyco_hydro_35	Domain	18	229	2.3e-69	235.1	Glycosyl hydrolases family 35
`XP_057782670.1`	Pfam	`PF17834`	GHD	Domain	252	308	4.6e-25	87.8	Beta-sandwich domain in beta galactosidase
`XP_057782670.1`	Pfam	`PF21467`	BetaGal_gal-bd	Domain	515	603	4.6e-32	110.7	Beta-galactosidase, galactose-binding domain
`XP_057782670.1`	Pfam	`PF02140`	SUEL_Lectin	Domain	659	736	9.4e-21	74.7	D-galactoside/L-rhamnose binding SUEL lectin domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057926685.1
AATTTGTTTTTCCCTTGTGAAAGAAATTAAAAAGTTAATTTACTATTTCCTCTATAAACAGCCACACCGTCACTCTCATAGTCTCATGCGCATTACGCTACACTACACAGCAGCAGTGCTGCAGAGCCTGAACCCAAAACAACGACGAAAACGTCACGTGGCGCAGCAGGAGTTAGCGTGCCGTCGCCGGCGCACGTTAGCTATCTTCCGGAACTGCTTTTGGTTAAGCCTTCGTTTGTTTCTTTCTCTTAAGACAAAGG...

XM_057926687.1
ATGTGGCCGGACTTGATACAGAAATCGAAAGACGGAGGATTGGATGTGATAGAAACTTACGTTTTCTGGAATTTGCACGAACCACTTCGCGGCAAGTATGATTTTGAAGGCAGAAAAGATTTGGTGAAATTTGTGAAATTGGTGAAGGAGGCTGGTCTGCTTCTTCATCTCCGAATCGGTCCCTATGTCTGTGCTGAATGGAATTATGGGTAAGCATTTTCTTCATTTTTCAAGTGGATTTCCTCTTTGGCTGCATTTTA...

CDS

2 records

下载 CDS FASTA

LOC131000663
ATGAGAGTAATGGCGGTGGTTTTGTACGGCTTGTTTTATTTGCTGGCGCTGACGACGTCGTTCTGTTTTGGCGCCAACGTGACGTACGATCACCGGGCGCTGGTGATAGACGGCAGGCGGAGGGTTCTCGTCTCCGGCTCCATCCATTACCCGCGCAGCACTCCTGATATGTGGCCGGACTTGATACAGAAATCGAAAGACGGAGGATTGGATGTGATAGAAACTTACGTTTTCTGGAATTTGCACGAACCACTTCGCGG...

LOC131000663
ATGTCTGTGCTGAATGGAATTATGGGTAAGCATTTTCTTCATTTTTCAAGTGGATTTCCTCTTTGGCTGCATTTTATACCAGGAATCAAGTTTCGAACAGATAATGAGCCCTTCAAGGCCGAAATGAAGAGATTTACGGCCAAGATTGTGGACATGATGAAGCAAGAAAATCTGTATGCATCCCAGGGAGGCCCCATAATTTTGTCTCAGATAGAAAATGAGTATGGAAACATTGATTCTGCTTATGGAGATGGTGCAAA...

Protein

2 records

下载 Protein FASTA

XP_057782668.1
MRVMAVVLYGLFYLLALTTSFCFGANVTYDHRALVIDGRRRVLVSGSIHYPRSTPDMWPDLIQKSKDGGLDVIETYVFWNLHEPLRGKYDFEGRKDLVKFVKLVKEAGLLLHLRIGPYVCAEWNYGGFPLWLHFIPGIKFRTDNEPFKAEMKRFTAKIVDMMKQENLYASQGGPIILSQIENEYGNIDSAYGDGAKKYINWAATMATSLDTGVPWVMCQQKDAPNPIIDTCNGFYCDQYTPNSNSKPKMWTENWSGWFSA...

XP_057782670.1
MSVLNGIMGKHFLHFSSGFPLWLHFIPGIKFRTDNEPFKAEMKRFTAKIVDMMKQENLYASQGGPIILSQIENEYGNIDSAYGDGAKKYINWAATMATSLDTGVPWVMCQQKDAPNPIIDTCNGFYCDQYTPNSNSKPKMWTENWSGWFSAFGDPLPYRPTEDVAFAVARFYQLGGTFQNYYMYHGGTNFGRSSGGPFITTTYDYDAPIDEYGLLRQPKWGHLKDVHKAIKLCEEAIVATDPKTTSLGSNLEATVYKTES...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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