Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001095`

染色体: Chr08 坐标: 8442358-8447843 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001095`
名称	SmilChr08G001095
描述	isovaleryl-CoA dehydrogenase, mitochondrial
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	8442358 - 8447843 / `-`

ID 对照

NCBI Gene ID	`LOC131000675`
GeneID	`131000675`
locus_tag	`-`
NCBI Name	`LOC131000675`
原始查询	`SmilChr08G001095`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	isovaleryl-CoA dehydrogenase, mitochondrial
产物	isovaleryl-CoA dehydrogenase%2C mitochondrial
Arabidopsis	`AT3G45300` (IVD) isovaleryl-CoA-dehydrogenase [Source:NCBI gene (formerly Entrezgene);Acc:823668] identity=84.6; qcov=1; evalue=0; confidence=high
Rice	`Os05g0125500` - identity=86.3; qcov=0.968; evalue=0; confidence=high
GO	GO:0005739 (mitochondrion); GO:0006552 (L-leucine catabolic process); GO:0008470 (3-methylbutanoyl-CoA dehydrogenase activity); GO:0050660 (flavin adenine dinucleotide binding)
KEGG	smil00280 (Valine, leucine and isoleucine degradation - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF00441 (Acyl-CoA_dh_1); PF02770 (Acyl-CoA_dh_M); PF02771 (Acyl-CoA_dh_N); PF08028 (Acyl-CoA_dh_2)
InterPro	-
eggNOG	-
NR	GeneID:131000675

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057782682.1`
2	Mitochondrion matrix	线粒体基质	1.00000	`XP_057782682.1`
3	Nucleus	细胞核	0.00000	`XP_057782682.1`
4	Chromosome	染色体	0.00000	`XP_057782682.1`
5	Centromere	着丝粒	0.00000	`XP_057782682.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:8442665`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C46
`Chr8:8442701`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A9,B101,B131
`Chr8:8442704`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B45,B62
`Chr8:8442716`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B114,B22,B52,B78,C59
`Chr8:8443720`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B104,B124,B26,C12,C40
`Chr8:8445112`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B137
`Chr8:8445900`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B140,C22

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782682.1

408 aa

204

408

Acyl-CoA_dh_N

Acyl-CoA_dh_M

Acyl-CoA_dh_1

Acyl-CoA_dh_2

PF02771 Acyl-CoA_dh_N 32-145 aa PF02770 Acyl-CoA_dh_M 149-244 aa PF00441 Acyl-CoA_dh_1 256-404 aa PF08028 Acyl-CoA_dh_2 271-387 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782682.1`	Pfam	`PF02771`	Acyl-CoA_dh_N	Domain	32	145	1.4e-39	135.7	Acyl-CoA dehydrogenase, N-terminal domain
`XP_057782682.1`	Pfam	`PF02770`	Acyl-CoA_dh_M	Domain	149	244	7.5e-27	94.1	Acyl-CoA dehydrogenase, middle domain
`XP_057782682.1`	Pfam	`PF00441`	Acyl-CoA_dh_1	Domain	256	404	5.1e-44	150.7	Acyl-CoA dehydrogenase, C-terminal domain
`XP_057782682.1`	Pfam	`PF08028`	Acyl-CoA_dh_2	Domain	271	387	2.8e-12	47.8	Acyl-CoA dehydrogenase, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057926699.1
TCATCAGCGTTATCGAAAAGATGATTTTGGCTTTCAGGTAATCAGGTTGTAAGAGTTGCGTGCGAATTTGGAATATATTTAATGCAAAAATCTGATGCCCATATTTATTTTTTCCATTTCGTTCTTTAAACTTCAAAACCAACCCAAATTGATCTCTTACCAAAATTCGAGCTTCCAAAGTTCTGCTTTCTCCATATTATTCACTGAGGAGAAGTAAATTTCCAGACAAGATGCAGAAATTGTTTGCAGCGAGGTCCCTC...

CDS

1 records

下载 CDS FASTA

LOC131000675
ATGCAGAAATTGTTTGCAGCGAGGTCCCTCGCTTCTTCATTATTCAGAAGAACCCACCGTTCCGCAGCTTTCTCCACATCTCTCCTCTTTGACGATACCCAGAAACAGTTTAAAGAAAGCGTGTCTCAGTTTGCTCAAGAAAACATTGCACCTCATGCCGCAGAGATCGACAGATCTAATTACTTACCAAAGGATGTTAACCTGTGGAAATTGATGGGAGATTTTAACCTCCATGGGATCACAGCTCCAGAGGAATATGG...

Protein

1 records

下载 Protein FASTA

XP_057782682.1
MQKLFAARSLASSLFRRTHRSAAFSTSLLFDDTQKQFKESVSQFAQENIAPHAAEIDRSNYLPKDVNLWKLMGDFNLHGITAPEEYGGLGLGYIYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRNGTPAQKQKYLPKLISGEHVGALAMSEPNAGSDVVSMKCKADRAKGGYILNGNKMWCTNGPVAETLVVYAKTDMAAHSKGITAFIIEKDMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENILGQEGKGVY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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