Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001096`

染色体: Chr08 坐标: 8454167-8457501 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001096`
名称	SmilChr08G001096
描述	uncharacterized SmilChr08G001096
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	8454167 - 8457501 / `-`

ID 对照

NCBI Gene ID	`LOC131000676`
GeneID	`131000676`
locus_tag	`-`
NCBI Name	`LOC131000676`
原始查询	`SmilChr08G001096`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Ulp1 protease family protein [Source:NCBI gene (formerly Entrezgene);Acc:834593]; symbol=AT5G45570; hit=AT5G45570; species=arabidopsis; confidence=weak
产物	Ulp1 protease family protein [Source:NCBI gene (formerly Entrezgene);Acc:834593]; symbol=AT5G45570; hit=AT5G45570; species=arabidopsis; confidence=weak
Arabidopsis	`AT5G45570` (AT5G45570) Ulp1 protease family protein [Source:NCBI gene (formerly Entrezgene);Acc:834593] identity=21.8; qcov=0.446; evalue=9.06e-08; confidence=weak
Rice	`-` -
GO	GO:0006508 (proteolysis); GO:0008234 (cysteine-type peptidase activity)
KEGG	-
Pfam	PF02902 (Peptidase_C48); PF09331 (DUF1985)
InterPro	-
eggNOG	-
NR	GeneID:131000676

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057782683.1`
2	Chromosome	染色体	0.00000	`XP_057782683.1`
3	Centromere	着丝粒	0.00000	`XP_057782683.1`
4	Chromatin	染色质	0.00000	`XP_057782683.1`
5	Telomere	端粒	0.00000	`XP_057782683.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:8454267`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A1
`Chr8:8454277`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B139
`Chr8:8454278`	`TCA`	`T`	2bp_deletion	frameshift_variant	2	B66,C6
`Chr8:8454278`	`TCA`	`T`	2bp_deletion	CDS_variant	2	B66,C6
`Chr8:8454295`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B28,C40
`Chr8:8454306`	`G`	`A`	EMS_canonical_SNV	stop_gained	76	A11,A15,A21,A3,A5,A6,A9,B100,B101,B105,B11,B117,B123,B127,B132,B133,B138,B139,B15,B18,B19,B21,B3,B34,B45,B48,B54,B56,B58,B59,B63,B67,B70,B78,B8,B80,B89,B90,B92,B95,B96,B99,C1,C10,C16,C21,C22,C27,C31,C34,C39,C4,C42,C43,C44,C47,C49,C5,C50,C51,C53,C54,C58,C6,C63,C65,C72,C76,C82,C84,C85,C87,D4,D7,D8,D9
`Chr8:8454341`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B118,B66
`Chr8:8454381`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C40,D8
`Chr8:8454423`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C80
`Chr8:8454427`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C80
`Chr8:8454434`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C80
`Chr8:8454492`	`G`	`A`	EMS_canonical_SNV	stop_gained	3	A24,B25,C41

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782683.1

823 aa

412

823

DUF1985

Peptidase_C48

PF09331 DUF1985 70-199 aa PF02902 Peptidase_C48 646-786 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782683.1`	Pfam	`PF09331`	DUF1985	Family	70	199	6.1e-12	46.4	Domain of unknown function (DUF1985)
`XP_057782683.1`	Pfam	`PF02902`	Peptidase_C48	Domain	646	786	1.2e-11	45.5	Ulp1 protease family, C-terminal catalytic domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057926700.1
TGGAAATACCTACGAAAAGGTATGGAGCAAATAAAACACAAGGTCAACATTACGGGCAAGGAGAACATTATTGAAATCATAAACGATGTTTTAAAGGGTGACAATGTATACCGTGAGCTGCAAGAGTCTGTTTTCAGCGATTTCCTAAAACTGCCATCCCGCATATCACGATCAGGCCAATGCTTGCATTTCATGATATCAAGACAGATAGCAGGACAATCAAATCCGGATGAGACGGCGTTGTTTTTTATCGTGGATGA...

CDS

1 records

下载 CDS FASTA

LOC131000676
ATGGAGCAAATAAAACACAAGGTCAACATTACGGGCAAGGAGAACATTATTGAAATCATAAACGATGTTTTAAAGGGTGACAATGTATACCGTGAGCTGCAAGAGTCTGTTTTCAGCGATTTCCTAAAACTGCCATCCCGCATATCACGATCAGGCCAATGCTTGCATTTCATGATATCAAGACAGATAGCAGGACAATCAAATCCGGATGAGACGGCGTTGTTTTTTATCGTGGATGACTATGTGACGAGGTTTTCCAG...

Protein

1 records

下载 Protein FASTA

XP_057782683.1
MEQIKHKVNITGKENIIEIINDVLKGDNVYRELQESVFSDFLKLPSRISRSGQCLHFMISRQIAGQSNPDETALFFIVDDYVTRFSRIEFFFMTGLKFGSSNFNPYADHIILENSFYQRVLGGREISPNKLREMFMTRGLGEHKADYVKAAKMLLVTDLIFGYDGTNSRIPDWLWVLLEDTTAWEEFPWGSMSFQMTIHAINKVRSTPAANASYHLTGNTLAFLAWMYCALPKLGKDIGERKPSKVFPRMLRFTYTNNRR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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