Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001117`

染色体: Chr08 坐标: 8680361-8684761 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001117`
名称	SmilChr08G001117
描述	interactor of constitutive active ROPs 3-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	8680361 - 8684761 / `+`

ID 对照

NCBI Gene ID	`LOC131000699`
GeneID	`131000699`
locus_tag	`-`
NCBI Name	`LOC131000699`
原始查询	`SmilChr08G001117`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	interactor of constitutive active ROPs 3-like
产物	interactor of constitutive active ROPs 3-like
Arabidopsis	`AT2G37080` (RIP2) ROP interactive partner 3 [Source:NCBI gene (formerly Entrezgene);Acc:818284] identity=38.7; qcov=1.14; evalue=5.86e-94; confidence=medium
Rice	`Os05g0122600` - identity=37; qcov=1.1; evalue=1.76e-76; confidence=medium
GO	-
KEGG	-
Pfam	PF27682 (ICR5_C)
InterPro	-
eggNOG	-
NR	GeneID:131000699

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoskeleton	细胞骨架	1.00000	`XP_057782710.1`
2	Cell membrane	细胞膜	0.60000	`XP_057782710.1`
3	Cytosol	细胞质基质	0.40000	`XP_057782710.1`
4	Nucleus	细胞核	0.00000	`XP_057782710.1`
5	Chromosome	染色体	0.00000	`XP_057782710.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:8682642`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:8682645`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B66,B8,D10
`Chr8:8682790`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C32,C68
`Chr8:8682811`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B110,B37
`Chr8:8682821`	`C`	`T`	EMS_canonical_SNV	stop_gained	8	A14,B32,B81,B86,C15,C57,C63,C79
`Chr8:8682844`	`T`	`TA`	1bp_insertion	frameshift_variant	4	B105,B17,C42,C85
`Chr8:8682844`	`T`	`TA`	1bp_insertion	CDS_variant	4	B105,B17,C42,C85
`Chr8:8683224`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C78,D11
`Chr8:8683330`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B6
`Chr8:8683382`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr8:8683425`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A20,B14
`Chr8:8683639`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B13,B35,B37,C85

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782710.1

555 aa

278

555

ICR5_C

PF27682 ICR5_C 421-495 aa

XP_057782711.1

555 aa

278

555

ICR5_C

PF27682 ICR5_C 421-495 aa

XP_057782712.1

555 aa

278

555

ICR5_C

PF27682 ICR5_C 421-495 aa

XP_057782713.1

555 aa

278

555

ICR5_C

PF27682 ICR5_C 421-495 aa

XP_057782714.1

555 aa

278

555

ICR5_C

PF27682 ICR5_C 421-495 aa

XP_057782715.1

555 aa

278

555

ICR5_C

PF27682 ICR5_C 421-495 aa

XP_057782716.1

555 aa

278

555

ICR5_C

PF27682 ICR5_C 421-495 aa

XP_057782717.1

555 aa

278

555

ICR5_C

PF27682 ICR5_C 421-495 aa

XP_057782718.1

555 aa

278

555

ICR5_C

PF27682 ICR5_C 421-495 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782710.1`	Pfam	`PF27682`	ICR5_C	Domain	421	495	1.1e-16	62.3	Interactor of constitutive active ROPs 5 C-terminal domain
`XP_057782711.1`	Pfam	`PF27682`	ICR5_C	Domain	421	495	1.1e-16	62.3	Interactor of constitutive active ROPs 5 C-terminal domain
`XP_057782712.1`	Pfam	`PF27682`	ICR5_C	Domain	421	495	1.1e-16	62.3	Interactor of constitutive active ROPs 5 C-terminal domain
`XP_057782713.1`	Pfam	`PF27682`	ICR5_C	Domain	421	495	1.1e-16	62.3	Interactor of constitutive active ROPs 5 C-terminal domain
`XP_057782714.1`	Pfam	`PF27682`	ICR5_C	Domain	421	495	1.1e-16	62.3	Interactor of constitutive active ROPs 5 C-terminal domain
`XP_057782715.1`	Pfam	`PF27682`	ICR5_C	Domain	421	495	1.1e-16	62.3	Interactor of constitutive active ROPs 5 C-terminal domain
`XP_057782716.1`	Pfam	`PF27682`	ICR5_C	Domain	421	495	1.1e-16	62.3	Interactor of constitutive active ROPs 5 C-terminal domain
`XP_057782717.1`	Pfam	`PF27682`	ICR5_C	Domain	421	495	1.1e-16	62.3	Interactor of constitutive active ROPs 5 C-terminal domain
`XP_057782718.1`	Pfam	`PF27682`	ICR5_C	Domain	421	495	1.1e-16	62.3	Interactor of constitutive active ROPs 5 C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

9 records

下载 cDNA FASTA

XM_057926728.1
AAAATGAGCAGCTTCACAAAAGTGAGTAGTGCACAACTTCATGAAACACTCATCGTAGGTTAGAGGTAAGCCTAGCTTTTATAGCTCAACCACCACCTCCTAAAACGACAACTCTTCCTCACTATGCTTGTCTGTCTCCACTCTCCACTCTATTTACTTATTCCATACAAAAATTAAATTAAATTGAATTTATTTGTGAGAGATTCCTGCTCATTCCCTACATATACAGATTCACCCACCACTTGCAATTTGCGAAACAA...

XM_057926727.1
ATCTTCTTGAAATTAGCTAAAAGACTCCCTATATCAAAAAAAAGTTTACAGTTGTCAACTAGCTATCTATGGCTGTATACAGTTCTTTCTTGGCTAAAGGAGATAATAATGTGAGGAAATGCTCTCAAACATTTCCAAGAACTTGAACGAGGCGTATATGCTGCTGCATTTTGTGGGTTCAGAGAGAGAGAGAGAGAGTTTGTATCTGCTTCTATAATTTTATTCCCTATGATTTTTTGGGTTAATGGGGCTGGATGCAA...

CDS

9 records

下载 CDS FASTA

LOC131000699
ATGCAGACGCCTAAGTCAAGAACCAGTTCCTCAGGAGCAGCTCCGCGGATTTCTCCTCACTCTATTTCATCTGAGGTGTCGGGGAAGAGCTCCCCTCGATCAGCTCCCTCCGAGGCATCCAGGAAACATTCTCCACGAGCTGCCCGCCAGCTCAAGACAAGTCCGCGTTTTTTAGAGCCCACCATCTCTTCTTCTAACCTAGCAACTCGAGCGCCAAAAGAGGCGAGCCTTAGAGTTTCTGATCACAACTCGCCTGCAAG...

Protein

9 records

下载 Protein FASTA

XP_057782710.1
MQTPKSRTSSSGAAPRISPHSISSEVSGKSSPRSAPSEASRKHSPRAARQLKTSPRFLEPTISSSNLATRAPKEASLRVSDHNSPASPLSEKKRLTKVAELESQISQLENDLKNVKDQLCSSEKSKKQAQRDADESNQELSVLSSKLEESEKKLLELSASRNALTVELSETSEERDRSLQAELEALQKQQLQESAALASALDEIERLKAQLEMVAASEANNSESAPTELHNLNEALVVVEEMKKQLSDSKKSEAEAQELV...

XP_057782711.1
MQTPKSRTSSSGAAPRISPHSISSEVSGKSSPRSAPSEASRKHSPRAARQLKTSPRFLEPTISSSNLATRAPKEASLRVSDHNSPASPLSEKKRLTKVAELESQISQLENDLKNVKDQLCSSEKSKKQAQRDADESNQELSVLSSKLEESEKKLLELSASRNALTVELSETSEERDRSLQAELEALQKQQLQESAALASALDEIERLKAQLEMVAASEANNSESAPTELHNLNEALVVVEEMKKQLSDSKKSEAEAQELV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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