当前解析结果
SmilChr08G001154| 统一新 Gene ID | SmilChr08G001154 |
|---|---|
| 名称 | SmilChr08G001154 |
| 描述 | cytosolic enolase 3 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 9142746 - 9152438 / - |
| NCBI Gene ID | LOC131000738 |
|---|---|
| GeneID | 131000738 |
| locus_tag | - |
| NCBI Name | LOC131000738 |
| 原始查询 | SmilChr08G001154 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cytosolic enolase 3 |
| 产物 | cytosolic enolase 3 |
| Arabidopsis | AT2G29560 (ENOC)cytosolic enolase [Source:NCBI gene (formerly Entrezgene);Acc:817505] identity=81.6; qcov=0.996; evalue=0; confidence=high |
| Rice | Os06g0136600 (OsEno5)- identity=57.8; qcov=0.924; evalue=5.8e-176; confidence=high |
| GO | GO:0000015 (phosphopyruvate hydratase complex); GO:0000287 (magnesium ion binding); GO:0004634 (phosphopyruvate hydratase activity); GO:0006096 (glycolytic process) |
| KEGG | smil00010 (Glycolysis / Gluconeogenesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage)); smil03018 (RNA degradation - Salvia miltiorrhiza (redroot sage)); smil04820 (Cytoskeleton in muscle cells - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00113 (Enolase_C); PF03952 (Enolase_N); PF13378 (MR_MLE_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000738 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057782771.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057782771.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057782771.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057782771.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057782771.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:9143308 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B60,B87,C38 |
Chr8:9143326 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D4 |
Chr8:9143576 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D4 |
Chr8:9143603 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C19 |
Chr8:9145206 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B55,B62,C19,C2 |
Chr8:9146161 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B4 |
Chr8:9146207 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B27,B52 |
Chr8:9146404 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B60,B87,C38 |
Chr8:9147861 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B30 |
Chr8:9148485 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C10 |
Chr8:9151899 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B74,D4 |
Chr8:9151962 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057782771.1PF03952
Enolase_N 47-176 aa
PF00113
Enolase_C 185-471 aa
PF13378
MR_MLE_C 317-437 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057782771.1 |
Pfam | PF03952 |
Enolase_N | Domain | 47 | 176 | 1.3e-53 | 181.4 | Enolase, N-terminal domain |
XP_057782771.1 |
Pfam | PF00113 |
Enolase_C | Domain | 185 | 471 | 1.8e-121 | 405.8 | Enolase, C-terminal TIM barrel domain |
XP_057782771.1 |
Pfam | PF13378 |
MR_MLE_C | Domain | 317 | 437 | 2.1e-07 | 31.6 | Enolase C-terminal domain-like |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。