当前解析结果
SmilChr08G001155| 统一新 Gene ID | SmilChr08G001155 |
|---|---|
| 名称 | SmilChr08G001155 |
| 描述 | exocyst complex component EXO70H1-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 9155628 - 9157888 / - |
| NCBI Gene ID | LOC131000739 |
|---|---|
| GeneID | 131000739 |
| locus_tag | - |
| NCBI Name | LOC131000739 |
| 原始查询 | SmilChr08G001155 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | exocyst complex component EXO70H1-like |
| 产物 | exocyst complex component EXO70H1-like |
| Arabidopsis | AT5G59730 (EXO70H7)exocyst subunit exo70 family protein H7 [Source:NCBI gene (formerly Entrezgene);Acc:836094] identity=48.8; qcov=0.941; evalue=0; confidence=high |
| Rice | Os04g0382200 (EXO70F3)- identity=33.6; qcov=0.832; evalue=1.51e-91; confidence=low |
| GO | GO:0000145 (exocyst); GO:0005546 (phosphatidylinositol-4,5-bisphosphate binding); GO:0006887 (exocytosis) |
| KEGG | - |
| Pfam | PF03081 (Exo70_C); PF20669 (Exo70_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000739 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057782772.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057782772.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057782772.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057782772.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057782772.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:9155811 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C57,D6 |
Chr8:9155834 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B106 |
Chr8:9155841 |
G |
GC |
1bp_insertion | frameshift_variant | 13 | B112,B19,B41,B66,B8,B88,B97,C29,C49,C55,C65,C83,D2 |
Chr8:9155843 |
TG |
T |
1bp_deletion | frameshift_variant | 13 | B112,B19,B41,B66,B8,B88,B97,C29,C49,C55,C65,C83,D2 |
Chr8:9155846 |
A |
AC |
1bp_insertion | frameshift_variant | 46 | A2,A5,A6,B105,B117,B118,B127,B136,B17,B18,B20,B21,B23,B37,B38,B39,B48,B5,B54,B56,B59,B67,B7,B70,B78,B80,B95,B96,C10,C16,C18,C22,C27,C29,C34,C4,C40,C42,C48,C49,C50,C54,C60,C63,C72,C84 |
Chr8:9156031 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B118 |
Chr8:9156100 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C19 |
Chr8:9156101 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B134,B47,B68,B74,C73 |
Chr8:9156119 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B73,C19 |
Chr8:9156248 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B15 |
Chr8:9156828 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B52,B60,B87,C38 |
Chr8:9157402 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B100,B56,B96 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057782772.1PF20669
Exo70_N 44-125 aa
PF03081
Exo70_C 248-614 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057782772.1 |
Pfam | PF20669 |
Exo70_N | Repeat | 44 | 125 | 1.4e-14 | 54.8 | Exocyst complex component Exo70 N-terminal |
XP_057782772.1 |
Pfam | PF03081 |
Exo70_C | Repeat | 248 | 614 | 1.3e-114 | 383.8 | Exo70 exocyst complex subunit C-terminal |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。