当前解析结果
SmilChr08G001161| 统一新 Gene ID | SmilChr08G001161 |
|---|---|
| 名称 | SmilChr08G001161 |
| 描述 | cytochrome P450 93B2-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 9261107 - 9265167 / - |
| NCBI Gene ID | LOC131000745 |
|---|---|
| GeneID | 131000745 |
| locus_tag | - |
| NCBI Name | LOC131000745 |
| 原始查询 | SmilChr08G001161 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cytochrome P450 93B2-like |
| 产物 | cytochrome P450 93B2-like |
| Arabidopsis | AT5G06900 (CYP93D1)cytochrome P450, family 93, subfamily D, polypeptide 1 [Source:NCBI gene (formerly Entrezgene);Acc:830580] identity=41.1; qcov=1.01; evalue=4.17e-132; confidence=medium |
| Rice | Os06g0613600 (OsCYP93F1)- identity=46.7; qcov=0.941; evalue=8.18e-152; confidence=high |
| GO | GO:0004497 (monooxygenase activity); GO:0005506 (iron ion binding); GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen); GO:0020037 (heme binding) |
| KEGG | smil00941 (Flavonoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00943 (Isoflavonoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00067 (p450) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000745 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057782785.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 0.80000 | XP_057782785.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057782785.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057782785.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057782785.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:9261216 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr8:9261251 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B134,B47,B68,B74,C82 |
Chr8:9261304 |
CCG |
C |
2bp_deletion | frameshift_variant | 1 | B32 |
Chr8:9261304 |
CCG |
C |
2bp_deletion | CDS_variant | 1 | B32 |
Chr8:9261449 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B136,B23,B78,B8,D11 |
Chr8:9261491 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B4 |
Chr8:9261533 |
C |
T |
EMS_canonical_SNV | stop_gained | 129 | A11,A16,A18,A19,A2,A20,A21,A22,A23,A24,A3,A4,A7,B100,B102,B104,B105,B107,B11,B112,B114,B115,B117,B12,B124,B126,B127,B130,B131,B135,B137,B140,B15,B17,B19,B23,B27,B28,B3,B30,B32,B38,B4,B40,B41,B42,B43,B44,B45,B46,B48,B49,B5,B52,B53,B54,B55,B57,B58,B6,B62,B63,B64,B65,B66,B67,B68,B69,B7,B71,B72,B73,B74,B75,B80,B83,B86,B9,B90,B93,B94,B95,B98,B99,C1,C11,C14,C15,C16,C17,C19,C21,C24,C25,C27,C29,C3,C31,C33,C34,C35,C37,C43,C5,C50,C52,C53,C57,C58,C61,C62,C63,C64,C66,C69,C7,C78,C79,C8,C81,C83,C84,C86,C87,C9,D10,D3,D6,D8 |
Chr8:9261619 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A11,A3,B3,B63,C58 |
Chr8:9261665 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A18,B97 |
Chr8:9261742 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C6 |
Chr8:9261846 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B10 |
Chr8:9264240 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B136,B20,B23,C18,C63 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057782785.1PF00067
p450 33-484 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057782785.1 |
Pfam | PF00067 |
p450 | Domain | 33 | 484 | 4.6e-105 | 352.8 | Cytochrome P450 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。