当前解析结果
SmilChr08G001204| 统一新 Gene ID | SmilChr08G001204 |
|---|---|
| 名称 | SmilChr08G001204 |
| 描述 | laccase-17-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 9726949 - 9729759 / - |
| NCBI Gene ID | LOC131000792 |
|---|---|
| GeneID | 131000792 |
| locus_tag | - |
| NCBI Name | LOC131000792 |
| 原始查询 | SmilChr08G001204 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | laccase-17-like |
| 产物 | laccase-17-like |
| Arabidopsis | AT5G60020 (LAC17)laccase 17 [Source:NCBI gene (formerly Entrezgene);Acc:836124] identity=71.1; qcov=0.913; evalue=0; confidence=high |
| Rice | Os01g0842500 (OsLAC5)- identity=65.9; qcov=0.952; evalue=0; confidence=high |
| GO | GO:0005507 (copper ion binding); GO:0046274 (lignin catabolic process); GO:0048046 (apoplast); GO:0052716 (hydroquinone:oxygen oxidoreductase activity) |
| KEGG | - |
| Pfam | PF00394 (Cu-oxidase); PF07731 (Cu-oxidase_2); PF07732 (Cu-oxidase_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000792 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 1.00000 | XP_057782851.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057782851.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057782851.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057782851.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057782851.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:9727227 |
CAA |
C |
2bp_deletion | frameshift_variant | 15 | B103,B139,B15,B22,B24,B38,B48,B84,B85,B92,B95,C13,C21,C44,C5 |
Chr8:9727230 |
C |
CGT |
2bp_insertion | frameshift_variant | 15 | B103,B139,B15,B22,B24,B38,B48,B84,B85,B92,B95,C13,C21,C44,C5 |
Chr8:9727245 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B22,B24,B92,C13,C5 |
Chr8:9727257 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B22,B24,B92,C13,C5 |
Chr8:9727267 |
ACC |
A |
2bp_deletion | frameshift_variant | 3 | B22,B24,C5 |
Chr8:9727267 |
ACC |
A |
2bp_deletion | CDS_variant | 3 | B22,B24,C5 |
Chr8:9727458 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:9727704 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C27,C84 |
Chr8:9727842 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B23,C16 |
Chr8:9727948 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A9,B101 |
Chr8:9728044 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B12 |
Chr8:9728046 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C41 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057782851.1PF07732
Cu-oxidase_3 77-189 aa
PF00394
Cu-oxidase 232-381 aa
PF07731
Cu-oxidase_2 497-620 aa
XP_057782852.1PF07732
Cu-oxidase_3 77-189 aa
PF00394
Cu-oxidase 203-353 aa
PF07731
Cu-oxidase_2 469-592 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057782851.1 |
Pfam | PF07732 |
Cu-oxidase_3 | Domain | 77 | 189 | 1.4e-43 | 148.5 | Multicopper oxidase |
XP_057782851.1 |
Pfam | PF00394 |
Cu-oxidase | Domain | 232 | 381 | 1.2e-45 | 156.1 | Multicopper oxidase |
XP_057782851.1 |
Pfam | PF07731 |
Cu-oxidase_2 | Domain | 497 | 620 | 8.8e-45 | 152.5 | Multicopper oxidase |
XP_057782852.1 |
Pfam | PF07732 |
Cu-oxidase_3 | Domain | 77 | 189 | 1.2e-43 | 148.7 | Multicopper oxidase |
XP_057782852.1 |
Pfam | PF00394 |
Cu-oxidase | Domain | 203 | 353 | 2.8e-46 | 158.2 | Multicopper oxidase |
XP_057782852.1 |
Pfam | PF07731 |
Cu-oxidase_2 | Domain | 469 | 592 | 8.7e-45 | 152.6 | Multicopper oxidase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。