Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001206`

染色体: Chr08 坐标: 9739725-9741207 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001206`
名称	SmilChr08G001206
描述	E3 ubiquitin-protein ligase RDUF2-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	9739725 - 9741207 / `-`

ID 对照

NCBI Gene ID	`LOC131000794`
GeneID	`131000794`
locus_tag	`-`
NCBI Name	`LOC131000794`
原始查询	`SmilChr08G001206`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	E3 ubiquitin-protein ligase RDUF2-like
产物	E3 ubiquitin-protein ligase RDUF2-like
Arabidopsis	`AT3G46620` (RDUF1) zinc finger (C3HC4-type RING finger) family protein [Source:NCBI gene (formerly Entrezgene);Acc:823815] identity=48; qcov=0.855; evalue=3.61e-83; confidence=high
Rice	`Os05g0110000` (OsRFP) - identity=55.4; qcov=0.699; evalue=4.03e-84; confidence=high
GO	GO:0005737 (cytoplasm); GO:0016567 (protein ubiquitination); GO:0061630 (ubiquitin protein ligase activity)
KEGG	-
Pfam	PF00097 (zf-C3HC4); PF06547 (DUF1117); PF13639 (zf-RING_2); PF13923 (zf-C3HC4_2); PF14369 (Zn_ribbon_19); PF17123 (zf-RING_11)
InterPro	-
eggNOG	-
NR	GeneID:131000794

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057782854.1`
2	Cytosol	细胞质基质	0.80000	`XP_057782854.1`
3	Nucleus	细胞核	0.20000	`XP_057782854.1`
4	Chromosome	染色体	0.00000	`XP_057782854.1`
5	Centromere	着丝粒	0.00000	`XP_057782854.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:9740070`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B110,B129,B60,C69
`Chr8:9740092`	`CA`	`C`	1bp_deletion	frameshift_variant	5	B104,B40,B72,C51,D10
`Chr8:9740092`	`CA`	`C`	1bp_deletion	CDS_variant	5	B104,B40,B72,C51,D10
`Chr8:9740119`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B115,B20,C58
`Chr8:9740156`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B115,B20,C58
`Chr8:9740172`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B115,B20,C58
`Chr8:9740173`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C84
`Chr8:9740175`	`TC`	`T`	1bp_deletion	frameshift_variant	3	A2,B66,B74
`Chr8:9740175`	`TC`	`T`	1bp_deletion	CDS_variant	3	A2,B66,B74
`Chr8:9740178`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B3,C27
`Chr8:9740183`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C23,C25,C51
`Chr8:9740188`	`CT`	`C`	1bp_deletion	frameshift_variant	1	C13

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782854.1

346 aa

173

346

Zn_ribbon_19

zf-RING_2

zf-RING_11

zf-C3HC4

zf-C3HC4_2

DUF1117

PF14369 Zn_ribbon_19 9-38 aa PF13639 zf-RING_2 166-208 aa PF17123 zf-RING_11 167-194 aa PF00097 zf-C3HC4 167-207 aa PF13923 zf-C3HC4_2 167-207 aa PF06547 DUF1117 226-331 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782854.1`	Pfam	`PF14369`	Zn_ribbon_19	Domain	9	38	4.4e-10	40.2	zinc-ribbon
`XP_057782854.1`	Pfam	`PF13639`	zf-RING_2	Domain	166	208	2.5e-12	47.5	Ring finger domain
`XP_057782854.1`	Pfam	`PF17123`	zf-RING_11	Domain	167	194	1.3e-07	31.9	RING-like zinc finger
`XP_057782854.1`	Pfam	`PF00097`	zf-C3HC4	Domain	167	207	1.1e-05	25.8	Zinc finger, C3HC4 type (RING finger)
`XP_057782854.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	167	207	9.7e-08	32.4	Zinc finger, C3HC4 type (RING finger)
`XP_057782854.1`	Pfam	`PF06547`	DUF1117	Family	226	331	7.6e-21	75.5	Protein of unknown function (DUF1117)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057926871.1
AATAGAGTAATTGTACATTTGATTTAGTAAGTAATGTAGGACTTTGACATATCTAAAAATTTGAAGGAAGGAGGATAACGGGCGTTAGCAGACGCGTTTTTATTCATGGGTATTACATACATAACACATTCAATTCTTATTTTTGGACATAACGTGTAATATTTCTCTAATGTCCTCTCTTTCATCAGTTTCTCTCTGTCTTCACAGCTCACACTCAACAATCATTTACGTATAAAAATATATACATTCACCAACAACCG...

CDS

1 records

下载 CDS FASTA

LOC131000794
ATGGATTCGCCTCCGCCTTCGCCGTCCTTCTGGTGCTACCAGTGCACCAGGATCGTCTCCGTCGTGTCTGAAGAAGCCGTCGTCTGCCCGCACTGCCGCGGCGGATTCATCCAATCGGTGGACCCCACCGATTTCTCGCCCGAGCATCCCCGCCGATTCGCGTCCCCTCGCCAACGCCGCCGCCGCAACGGCACCTCGTTCAATCCGCTCATAGTCCTCCGGAACAGCTCGGAGGAGTCGTCGGAGTCCCCTCCCGGCGG...

Protein

1 records

下载 Protein FASTA

XP_057782854.1
MDSPPPSPSFWCYQCTRIVSVVSEEAVVCPHCRGGFIQSVDPTDFSPEHPRRFASPRQRRRRNGTSFNPLIVLRNSSEESSESPPGGGRRSYELYYDDGSGTGIRPLPSSMSESLLGSGFEVMLDRLSQIGFSLWARPENPPASKQAVASLPAVQIQACHVDADAHCAVCTDPFALGSEAREMPCKHIYHADCIFPWLNLHNSCPVCRHELPVDEPDGVSGQSGAVGLSIWRLPGGGFAVGRFVGGGEGEMPAVYSEVEG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器