Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001210`

染色体: Chr08 坐标: 9784091-9788287 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001210`
名称	SmilChr08G001210
描述	uncharacterized SmilChr08G001210
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	9784091 - 9788287 / `-`

ID 对照

NCBI Gene ID	`LOC131000798`
GeneID	`131000798`
locus_tag	`-`
NCBI Name	`LOC131000798`
原始查询	`SmilChr08G001210`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	GTPase Der (DUF707) [Source:NCBI gene (formerly Entrezgene);Acc:826896]; symbol=AT4G12840; hit=AT4G12840; species=arabidopsis; confidence=high
产物	GTPase Der (DUF707) [Source:NCBI gene (formerly Entrezgene);Acc:826896]; symbol=AT4G12840; hit=AT4G12840; species=arabidopsis; confidence=high
Arabidopsis	`AT4G12840` (AT4G12840) GTPase Der (DUF707) [Source:NCBI gene (formerly Entrezgene);Acc:826896] identity=61.1; qcov=0.981; evalue=1.81e-138; confidence=high
Rice	`Os06g0731900` (B1206D04.27-2) - identity=55.1; qcov=0.974; evalue=9.36e-115; confidence=high
GO	-
KEGG	-
Pfam	PF05212 (DUF707)
InterPro	-
eggNOG	-
NR	GeneID:131000798

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057782859.1`
2	Golgi stack	高尔基堆	0.20000	`XP_057782859.1`
3	Nucleus	细胞核	0.00000	`XP_057782859.1`
4	Chromosome	染色体	0.00000	`XP_057782859.1`
5	Centromere	着丝粒	0.00000	`XP_057782859.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:9785424`	`T`	`TGC`	2bp_insertion	frameshift_variant	2	A15,B122
`Chr8:9785424`	`T`	`TGC`	2bp_insertion	CDS_variant	2	A15,B122
`Chr8:9786039`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B1,B140,C82,D6
`Chr8:9786425`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B46,B78,C14,C51
`Chr8:9786587`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B24
`Chr8:9786867`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C19,C39

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782859.1

394 aa

197

394

DUF707

PF05212 DUF707 65-372 aa

XP_057782860.1

394 aa

197

394

DUF707

PF05212 DUF707 65-372 aa

XP_057782861.1

309 aa

154

309

DUF707

PF05212 DUF707 1-287 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782859.1`	Pfam	`PF05212`	DUF707	Family	65	372	5.1e-139	463.3	Protein of unknown function (DUF707)
`XP_057782860.1`	Pfam	`PF05212`	DUF707	Family	65	372	5.1e-139	463.3	Protein of unknown function (DUF707)
`XP_057782861.1`	Pfam	`PF05212`	DUF707	Family	1	287	4.3e-130	434.0	Protein of unknown function (DUF707)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057926876.1
TTCTCTTATTAATTTTCAAACACGCATCTCTCTCATATGGTAACTCATAAAACGATTGAACCCAAAAGGAAGAGATCCTTTATATGCAGCTGGTTTCCTGCAGCAATTCTCATTTCAACAATTTTCCTTATAGGGAGTGCTCTGTTAGTCACTGATTATAAAGAGAATTTTTTTGGATGTAATCTGCATCCAGTCGTTGTGGAAAAGTCCAAGATTTGTGAGAAAGAGTGCAGGCCTGATGGAACTGAGACTCTACCAAG...

XM_057926877.1
TTTTCAAACACGCATCTCTCTCATGTATATATCACCTCCCCTCAAATTATACATAAAGATTCATTCTGCTTCTTTTTTTCTTCATCACTGATCACTCATATATTTCTACACACATATGAACAAACACAAAGCGAAGTTGTATCACTTTCTTTCAAATTCTTGAAAAACTCTTGTTTTACGTGGACTAAATTTTCATGCTGTAAATATGGTAACTCATAAAACGATTGAACCCAAAAGGAAGAGATCCTTTATATGCAGCT...

CDS

3 records

下载 CDS FASTA

LOC131000798
ATGGTAACTCATAAAACGATTGAACCCAAAAGGAAGAGATCCTTTATATGCAGCTGGTTTCCTGCAGCAATTCTCATTTCAACAATTTTCCTTATAGGGAGTGCTCTGTTAGTCACTGATTATAAAGAGAATTTTTTTGGATGTAATCTGCATCCAGTCGTTGTGGAAAAGTCCAAGATTTGTGAGAAAGAGTGCAGGCCTGATGGAACTGAGACTCTACCAAGAGGTATTGTCACAAGAACTACTGATCTGGAGATGAG...

Protein

3 records

下载 Protein FASTA

XP_057782859.1
MVTHKTIEPKRKRSFICSWFPAAILISTIFLIGSALLVTDYKENFFGCNLHPVVVEKSKICEKECRPDGTETLPRGIVTRTTDLEMRPLWGPPKKKKSKSPMNLLAIAVGIKQKKNVNEIVNKFQLADFAIMLFHYDGNVDGWRDLEWSNSAVHVSAVNQTKWWFAKRFLHPDIVAAYDYIFLWDEDLGVEHFHVGRYLSIIKKEGLQISQPAIDAGISEVHYTLTAREINSTVHRKAVNLRGPGHRCFENSMEPPCTGF...

XP_057782860.1
MVTHKTIEPKRKRSFICSWFPAAILISTIFLIGSALLVTDYKENFFGCNLHPVVVEKSKICEKECRPDGTETLPRGIVTRTTDLEMRPLWGPPKKKKSKSPMNLLAIAVGIKQKKNVNEIVNKFQLADFAIMLFHYDGNVDGWRDLEWSNSAVHVSAVNQTKWWFAKRFLHPDIVAAYDYIFLWDEDLGVEHFHVGRYLSIIKKEGLQISQPAIDAGISEVHYTLTAREINSTVHRKAVNLRGPGHRCFENSMEPPCTGF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器