Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001214`

染色体: Chr08 坐标: 9805458-9809457 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001214`
名称	SmilChr08G001214
描述	uncharacterized SmilChr08G001214
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	9805458 - 9809457 / `-`

ID 对照

NCBI Gene ID	`LOC131000802`
GeneID	`131000802`
locus_tag	`-`
NCBI Name	`LOC131000802`
原始查询	`SmilChr08G001214`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:826895]; symbol=AT4G12830; hit=AT4G12830; species=arabidopsis; confidence=high
产物	alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:826895]; symbol=AT4G12830; hit=AT4G12830; species=arabidopsis; confidence=high
Arabidopsis	`AT4G12830` (AT4G12830) alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:826895] identity=71.9; qcov=0.897; evalue=0; confidence=high
Rice	`Os01g0919700` - identity=67.4; qcov=0.961; evalue=0; confidence=high
GO	GO:0004301 (epoxide hydrolase activity)
KEGG	-
Pfam	PF00561 (Abhydrolase_1); PF12146 (Hydrolase_4); PF12697 (Abhydrolase_6)
InterPro	-
eggNOG	-
NR	GeneID:131000802

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057782868.1`
2	Chloroplast thylakoid	类囊体	0.60000	`XP_057782868.1`
3	Chloroplast membrane	叶绿体膜	0.40000	`XP_057782868.1`
4	Chloroplast stroma	叶绿体基质	0.40000	`XP_057782868.1`
5	Chloroplast thylakoid membrane	类囊体膜	0.20000	`XP_057782868.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:9805707`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C21,C36
`Chr8:9805733`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B30,C83
`Chr8:9805947`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B78
`Chr8:9806694`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C52,D4
`Chr8:9807125`	`A`	`ATT`	2bp_insertion	frameshift_variant	6	A16,B133,B63,B77,B94,C25
`Chr8:9807428`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C16
`Chr8:9808663`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B53,B71
`Chr8:9809185`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr8:9809213`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B53,C77
`Chr8:9809226`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B136

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782868.1

389 aa

194

389

Hydrolase_4

Abhydrolase_1

Abhydrolase_6

PF12146 Hydrolase_4 129-355 aa PF00561 Abhydrolase_1 130-368 aa PF12697 Abhydrolase_6 130-375 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782868.1`	Pfam	`PF12146`	Hydrolase_4	Domain	129	355	3.6e-09	37.0	Serine aminopeptidase, S33
`XP_057782868.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	130	368	1.2e-17	65.1	alpha/beta hydrolase fold
`XP_057782868.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	130	375	2.7e-09	38.7	Alpha/beta hydrolase family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057926885.1
ATCTAATGTGACTAATGAGAACCAGAAAAACCCTATCCCCAGTTCCGGTTATAACCTCCAGAGAAAATCATCCAATTTTAATGCCAATTTTCAGAAAGGAAATACAAACCAACGGTCATAACTGTCACACTATTGTTACCAAACAATCTTCCTTCCAATTCAATGGCACTTTCCTTCTTCTCTGCTTCTGCTTCACTTCCATTGCCCAAACATCATCCTCTCATTTCTACTCCCCAAAATCTCCCTAGAAAGAGAAATCG...

CDS

1 records

下载 CDS FASTA

LOC131000802
ATGGCACTTTCCTTCTTCTCTGCTTCTGCTTCACTTCCATTGCCCAAACATCATCCTCTCATTTCTACTCCCCAAAATCTCCCTAGAAAGAGAAATCGGCGACTCATTTGCCGATCAAGCAGTGATTCCGACGAGGATTATTTGCTGGATGCTCCAGTTTCGATTGGAGATGGATTTTCCTTTAGTGGGGGGAAATATTCAGACGAGCCAAGCCCTGCTGATGAATGGTTCAAGCAAGGAAAGATTGTGAAAGCACACCC...

Protein

1 records

下载 Protein FASTA

XP_057782868.1
MALSFFSASASLPLPKHHPLISTPQNLPRKRNRRLICRSSSDSDEDYLLDAPVSIGDGFSFSGGKYSDEPSPADEWFKQGKIVKAHPVGGTGEKAKDPIFGLAMAGSSQASTDLFRWFCVESGTPGNHSVILIHGFPSQAYSYRKVLPILSKNNHVIAFDWLGFGFSDKPQPRYGFDYTLKEYVDSLESLINELSKDKVTLVVQGYFSPVVVKYAKDHQEKLNNLILLNPPLTVKHANLPSTLSIFSNFLLGEIFSQDPL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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