Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001215`

染色体: Chr08 坐标: 9809684-9817763 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001215`
名称	SmilChr08G001215
描述	uncharacterized SmilChr08G001215
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	9809684 - 9817763 / `+`

ID 对照

NCBI Gene ID	`LOC131000803`
GeneID	`131000803`
locus_tag	`-`
NCBI Name	`LOC131000803`
原始查询	`SmilChr08G001215`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os11g0247400; species=rice; confidence=high
产物	hit=Os11g0247400; species=rice; confidence=high
Arabidopsis	`AT3G25470` (AT3G25470) bacterial hemolysin-like protein [Source:NCBI gene (formerly Entrezgene);Acc:822131] identity=66.8; qcov=0.901; evalue=1.23e-128; confidence=high
Rice	`Os11g0247400` - identity=74.8; qcov=0.875; evalue=7.01e-149; confidence=high
GO	GO:0003723 (RNA binding); GO:0008168 (methyltransferase activity); GO:0032259 (methylation)
KEGG	-
Pfam	PF01479 (S4); PF01728 (FtsJ)
InterPro	-
eggNOG	-
NR	GeneID:131000803

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057782869.1`
2	Mitochondrion matrix	线粒体基质	0.40000	`XP_057782872.1`
3	Chloroplast	叶绿体	0.20000	`XP_057782869.1`
4	Nucleus	细胞核	0.00000	`XP_057782869.1`
5	Chromosome	染色体	0.00000	`XP_057782869.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:9814571`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:9814614`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B55,C2,C75
`Chr8:9815046`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B55,C2,C75
`Chr8:9816118`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C57
`Chr8:9816265`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B24
`Chr8:9816531`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B40,B48
`Chr8:9816580`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B78

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782869.1

335 aa

168

335

FtsJ

PF01479 S4 70-106 aa PF01728 FtsJ 126-306 aa

XP_057782871.1

335 aa

168

335

FtsJ

PF01479 S4 70-106 aa PF01728 FtsJ 126-306 aa

XP_057782872.1

304 aa

152

304

FtsJ

PF01479 S4 39-75 aa PF01728 FtsJ 95-275 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782869.1`	Pfam	`PF01479`	S4	Domain	70	106	3e-06	27.6	S4 domain
`XP_057782869.1`	Pfam	`PF01728`	FtsJ	Family	126	306	8.7e-36	124.2	FtsJ-like methyltransferase
`XP_057782871.1`	Pfam	`PF01479`	S4	Domain	70	106	3e-06	27.6	S4 domain
`XP_057782871.1`	Pfam	`PF01728`	FtsJ	Family	126	306	8.7e-36	124.2	FtsJ-like methyltransferase
`XP_057782872.1`	Pfam	`PF01479`	S4	Domain	39	75	2.6e-06	27.8	S4 domain
`XP_057782872.1`	Pfam	`PF01728`	FtsJ	Family	95	275	6.7e-36	124.6	FtsJ-like methyltransferase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057926889.1
ATTGGTCGGAATCTAATATATAAAAAATTACTCCGTTGCAACAAGGAAGGAGTGGGCTCTATTCTCTGCAATTTCTTTCACAATGATGAACTGATAATTCTACTGCAAAAACCGATTATAAACAGTTTCAGTTTTGCTCAAAGTATCTAGAGCGTCTTATTGATTTCTAGTTGGAATTATCGGAGGCTTGGCGCGAACGCAACGACGAAAATCCGAAGCGAGGTGTTAAAATCTGAATGCAGAATTCTGACAACAATCCA...

XM_057926888.1
TCTATTCTCTGCAATTTCTTTCACAATGATGAACTGATAATTCTACTGCAAAAACCGATTATAAACAGTTTCAGTTTTGCTCAAAGTATCTAGAGCGTCTTATTGATTTCTAGTTGGAATTATCGGAGGCTTGGCGCGAACGCAACGACGAAAATCCGAAGCGAGGTGTTAAAATCTGAATGCAGAATTCTGACAACAATCCATGGCAGCTCCGATCAGCCAAGAATGGTGCTAATTTCCATCGTTTTGACAGAGTTGGG...

CDS

3 records

下载 CDS FASTA

LOC131000803
ATGGTGCTAATTTCCATCGTTTTGACAGTAAGATTGGTCGATGCCCCGGTGCATAAGTTTGTCAAGAGCTTTGCTGCTTCCAGTTCGGAGAAGATTAAAGTGCAGAGAAAGAAAAGGAGACTAGATGAAGCGTGCCTCGAAAGATTTCAGCAATATAGTCGAACATTCATACAGTCGTGGATTATTCAGGGCAAAGTATTTGTTGATGGGAAAGTGGTAAACAAATGTGGAGCACAAATTTCTGATAAATCTGTTGTTGA...

LOC131000803
ATGAGAAAAATGGCAGTGGCCACGTCGCGCTACTTCGGCGGAGCCGGCGCATCTGTTTCGGGTTGCAGGATTTTTTTTACCAACTACTCCTCTAAATTCACCAACTCTCCTGTTTCCTTAGTAAGATTGGTCGATGCCCCGGTGCATAAGTTTGTCAAGAGCTTTGCTGCTTCCAGTTCGGAGAAGATTAAAGTGCAGAGAAAGAAAAGGAGACTAGATGAAGCGTGCCTCGAAAGATTTCAGCAATATAGTCGAACATT...

Protein

3 records

下载 Protein FASTA

XP_057782869.1
MRKMAVATSRYFGGAGASVSGCRIFFTNYSSKFTNSPVSLVRLVDAPVHKFVKSFAASSSEKIKVQRKKRRLDEACLERFQQYSRTFIQSWIIQGKVFVDGKVVNKCGAQISDKSVVDIQAEVPKYVCRGGHKLEAAIEQLEIDVTGKVALDSGLSTGGFTDCLLQYGASFVYGVDVGYGQVADKIRRHECVSVIERTNLRYLTELPQKVDLVTLDLSFISILTVMPAVIGLMKNDATLVTLIKPQFEAHRSQVGGGGIV...

XP_057782871.1
MRKMAVATSRYFGGAGASVSGCRIFFTNYSSKFTNSPVSLVRLVDAPVHKFVKSFAASSSEKIKVQRKKRRLDEACLERFQQYSRTFIQSWIIQGKVFVDGKVVNKCGAQISDKSVVDIQAEVPKYVCRGGHKLEAAIEQLEIDVTGKVALDSGLSTGGFTDCLLQYGASFVYGVDVGYGQVADKIRRHECVSVIERTNLRYLTELPQKVDLVTLDLSFISILTVMPAVIGLMKNDATLVTLIKPQFEAHRSQVGGGGIV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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