Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001254`

染色体: Chr08 坐标: 9942601-9951902 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001254`
名称	SmilChr08G001254
描述	mediator of RNA polymerase II transcription subunit 14
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	9942601 - 9951902 / `-`

ID 对照

NCBI Gene ID	`LOC131000816`
GeneID	`131000816`
locus_tag	`-`
NCBI Name	`LOC131000816`
原始查询	`SmilChr08G001254`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	mediator of RNA polymerase II transcription subunit 14
产物	mediator of RNA polymerase II transcription subunit 14
Arabidopsis	`AT3G04740` (SWP) RNA polymerase II transcription mediator [Source:NCBI gene (formerly Entrezgene);Acc:819634] identity=69.8; qcov=0.546; evalue=0; confidence=medium
Rice	`Os09g0281900` (OsMed14_2) - identity=53.8; qcov=1.02; evalue=0; confidence=high
GO	GO:0003712 (transcription coregulator activity); GO:0006357 (regulation of transcription by RNA polymerase II); GO:0016592 (mediator complex); GO:0070847 (core mediator complex)
KEGG	-
Pfam	PF08638 (Med14)
InterPro	-
eggNOG	-
NR	GeneID:131000816

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057782890.1`
2	Nucleus membrane	核膜	0.40000	`XP_057782890.1`
3	Nucleoplasm	核质	0.20000	`XP_057782890.1`
4	Chromosome	染色体	0.00000	`XP_057782890.1`
5	Centromere	着丝粒	0.00000	`XP_057782890.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:9942958`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B74,C73,D2
`Chr8:9943142`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A18
`Chr8:9943191`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B127
`Chr8:9943242`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D8
`Chr8:9943363`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C19
`Chr8:9943377`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B108,C12,C75
`Chr8:9943385`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B64,B78,C41
`Chr8:9943396`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B29
`Chr8:9943396`	`TG`	`T`	1bp_deletion	CDS_variant	1	B29
`Chr8:9943482`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B109,B24,C51
`Chr8:9943525`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A23
`Chr8:9943539`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B88

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782890.1

1785 aa

892

1785

Med14

PF08638 Med14 9-198 aa

XP_057782891.1

1777 aa

888

1777

Med14

PF08638 Med14 9-198 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782890.1`	Pfam	`PF08638`	Med14	Family	9	198	3.3e-52	177.4	Mediator complex subunit MED14
`XP_057782891.1`	Pfam	`PF08638`	Med14	Family	9	198	3.3e-52	177.4	Mediator complex subunit MED14

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057926907.1
GTGAGTACTGTAAGTCGGTCTTTGACTCTTAAAATAACAGTACGATCTAAAAATCGATTTCTTTTTACAAGAATAGAAAGGCTTAGCGCAGCGGCGAGAGAGAGAGAGACCGAGAAACATCCTGCTCCGATGATTTCTTCTTCCTCTTTTTGTTCAGAACGATTCTTTGCAATCAAGTGGTAATTCAGCGAATTCAGTTGGGGGTCAAGGGGAATCATGACGGAGGTAGGGCAGGAGACGGTGAATTTCGCGGCTCTGGT...

XM_057926908.1
TAAAATAACAGTACGATCTAAAAATCGATTTCTTTTTACAAGAATAGAAAGGCTTAGCGCAGCGGCGAGAGAGAGAGAGACCGAGAAACATCCTGCTCCGATGATTTCTTCTTCCTCTTTTTGTTCAGAACGATTCTTTGCAATCAAGTGGTAATTCAGCGAATTCAGTTGGGGGTCAAGGGGAATCATGACGGAGGTAGGGCAGGAGACGGTGAATTTCGCGGCTCTGGTGGGCCGGGCCGCGGAGGAATCCTACGTCG...

CDS

2 records

下载 CDS FASTA

LOC131000816
ATGACGGAGGTAGGGCAGGAGACGGTGAATTTCGCGGCTCTGGTGGGCCGGGCCGCGGAGGAATCCTACGTCGCGCTCAAGGAATTGGTGGAGAAATCCAAGTCTTCGGAGTCGTTGTCAGACTCCGAGAAGAAGATTATGATTCTGAAGTACATTGTTAAGACGCAGCAGCGGATGCTCCGTCTTGATGTCCTCGCTAAGTGGTGCCAACAGGTTCCTTTGATACAATATTGCCAACAACTTGCATCAACTCTATCCAG...

Protein

2 records

下载 Protein FASTA

XP_057782890.1
MTEVGQETVNFAALVGRAAEESYVALKELVEKSKSSESLSDSEKKIMILKYIVKTQQRMLRLDVLAKWCQQVPLIQYCQQLASTLSSHETCFTQAADSMFFMHEGLQQARAPIYDVPSAIEVLLTGTYQRLPKCVEDVGMLGTLNEDQQGPALKKLDTLVRSKLLEVSLPKEFTEIKVSDGVVLLRVDGEFKILVTLGYRGHLSMWRILHLELLVGERSGLVKVEASRRHALGDDLERRMAASEAPFMTLYSILHELCVA...

XP_057782891.1
MTEVGQETVNFAALVGRAAEESYVALKELVEKSKSSESLSDSEKKIMILKYIVKTQQRMLRLDVLAKWCQQVPLIQYCQQLASTLSSHETCFTQAADSMFFMHEGLQQARAPIYDVPSAIEVLLTGTYQRLPKCVEDVGMLGTLNEDQQGPALKKLDTLVRSKLLEVSLPKEFTEIKVSDGVVLLRVDGEFKILVTLGYRGHLSMWRILHLELLVGERSGLVKVEASRRHALGDDLERRMAASEAPFMTLYSILHELCVA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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