Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.

Resolved gene

`SmilChr08G001257`

Chromosome: Chr08 Coordinates: 9963412-9966546 Strand: + Biotype: protein_coding

Basic Information

Standard Gene ID	`SmilChr08G001257`
Name	SmilChr08G001257
Description	uncharacterized SmilChr08G001257
Chromosome / SeqID	Chr08 / NC_080394.1
Coordinates and Strand	9963412 - 9966546 / `+`

ID Mapping

NCBI Gene ID	`LOC131000881`
GeneID	`131000881`
locus_tag	`-`
NCBI Name	`LOC131000881`
Original query	`SmilChr08G001257`

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Functional Annotation

Source	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
Description	cyclin-like protein [Source:NCBI gene (formerly Entrezgene);Acc:821502]; symbol=AT3G19650; hit=AT3G19650; species=arabidopsis; confidence=medium
Product	cyclin-like protein [Source:NCBI gene (formerly Entrezgene);Acc:821502]; symbol=AT3G19650; hit=AT3G19650; species=arabidopsis; confidence=medium
Arabidopsis	`AT3G19650` (AT3G19650) cyclin-like protein [Source:NCBI gene (formerly Entrezgene);Acc:821502] identity=38.4; qcov=1.02; evalue=2.84e-41; confidence=medium
Rice	`Os03g0203000` - identity=36.8; qcov=0.763; evalue=3.52e-26; confidence=medium
GO	GO:0003729 (mRNA binding); GO:0006397 (mRNA processing); GO:0035145 (exon-exon junction complex)
KEGG	-
Pfam	PF09405 (Btz)
InterPro	-
eggNOG	-
NR	GeneID:131000881

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Subcellular Localization Top 5

Rank	Location	Chinese	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057783000.1`
2	Nuclear speckle	核斑点	0.60000	`XP_057783000.1`
3	Nucleoplasm	核质	0.60000	`XP_057783000.1`
4	Cytoplasm	细胞质	0.20000	`XP_057783000.1`
5	Chromosome	染色体	0.00000	`XP_057783000.1`

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EMS Mutant Variants

The table shows the first 12 candidate EMS variants for this gene. Open the EMS module for full filtering and downloads.

Position	REF	ALT	Type	Effect	Carriers	Samples
`Chr8:9963860`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B45,B62,D4
`Chr8:9965795`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A13,A4,C40
`Chr8:9965997`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B99,C87
`Chr8:9966006`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B111,B15,B2,C7,C76
`Chr8:9966060`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B88
`Chr8:9966075`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B102
`Chr8:9966195`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B111,B15,B2,C7,C76
`Chr8:9966276`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D8

Open EMS variants

Predicted Protein Domains

Domain results are from the Pfam-A HMM database and HMMER hmmscan; positions are amino-acid coordinates on the corresponding protein sequence.

XP_057783000.1

317 aa

158

317

Btz

PF09405 Btz 73-184 aa

Protein ID	Source	Domain ID	Domain name	Type	Start aa	End aa	E-value	Score	Description
`XP_057783000.1`	Pfam	`PF09405`	Btz	Domain	73	184	1.3e-08	35.8	CASC3/Barentsz eIF4AIII binding

cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

1 records

Download cDNA FASTA

XM_057927017.1
CAAAAAGAAAAATTAAAAGAATTAAATTGTACGTCAAAGGACTCAAATGAGTTGGTCAGTGGGATTGGTTTAGGGATTCAAGTGAGTGCAGCTCTTTCACCGCCGCGGCTCAGAACAAAGTGGTGGCGCCGCTTACTCATAGAGTCGAGAGAGCTTTAGTATTATCCAACGCAATCCAATGTCACGTCGAGAAGACCGTAGCTCGGAATCGAAGCGCCACCGTTCGCGCTTCGACCGTGAACCGAGCCCCAAGAGATCTA...

CDS

1 records

Download CDS FASTA

LOC131000881
ATGTCACGTCGAGAAGACCGTAGCTCGGAATCGAAGCGCCACCGTTCGCGCTTCGACCGTGAACCGAGCCCCAAGAGATCTAGGAGAGATGGTAAACCGGAGACTGAAAAGCCGCCGGGCGAGCCGGACTTGGATAAGGACCGGTCGGACCGGGATCATCGGCACCACCGCCGGCTTCCAGGTCCACCGCCACTTGAATGTGGAAACATGAACAGAGAATCTGAAAGGGGGGCTGATGCACATAAAGCAGTAGCCAAACG...

Protein

1 records

Download Protein FASTA

XP_057783000.1
MSRREDRSSESKRHRSRFDREPSPKRSRRDGKPETEKPPGEPDLDKDRSDRDHRHHRRLPGPPPLECGNMNRESERGADAHKAVAKRSSDPTKIPQSRSYFQHDDRNSAGQNGRGFSRRADSERGWWSDPKEQRNDKSTDKTASIDAQLKDEKSKDNREGSHVWRHDGYFEMEGNQKPPTRRRPSFREQKIPADPDKSSKAAGDPVLPNPQDHAIDGGRRNDRGHNSRFSDRPERPVAGGRELNKAQSWRGNFSSGDRFN...

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

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