Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001274`

染色体: Chr08 坐标: 10153243-10155372 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001274`
名称	SmilChr08G001274
描述	uncharacterized SmilChr08G001274
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	10153243 - 10155372 / `+`

ID 对照

NCBI Gene ID	`LOC131000876`
GeneID	`131000876`
locus_tag	`-`
NCBI Name	`LOC131000876`
原始查询	`SmilChr08G001274`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transcriptional regulator of RNA polII, SAGA, subunit [Source:NCBI gene (formerly Entrezgene);Acc:815974]; symbol=AT2G14850; hit=AT2G14850; species=arabidopsis; confidence=high
产物	transcriptional regulator of RNA polII, SAGA, subunit [Source:NCBI gene (formerly Entrezgene);Acc:815974]; symbol=AT2G14850; hit=AT2G14850; species=arabidopsis; confidence=high
Arabidopsis	`AT2G14850` (AT2G14850) transcriptional regulator of RNA polII, SAGA, subunit [Source:NCBI gene (formerly Entrezgene);Acc:815974] identity=47.8; qcov=1; evalue=1.09e-96; confidence=high
Rice	`Os12g0580500` - identity=34; qcov=1.08; evalue=2.34e-49; confidence=low
GO	GO:0000124 (SAGA complex); GO:0003713 (transcription coactivator activity); GO:0006357 (regulation of transcription by RNA polymerase II)
KEGG	-
Pfam	PF12767 (SAGA-Tad1)
InterPro	-
eggNOG	-
NR	GeneID:131000876

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057782991.1`
2	Chromosome	染色体	0.20000	`XP_057782991.1`
3	Centromere	着丝粒	0.00000	`XP_057782991.1`
4	Chromatin	染色质	0.00000	`XP_057782991.1`
5	Telomere	端粒	0.00000	`XP_057782991.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:10154159`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B27
`Chr8:10154164`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B102,B53,B71
`Chr8:10154313`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B117
`Chr8:10154338`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B136

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782991.1

334 aa

167

334

SAGA-Tad1

PF12767 SAGA-Tad1 6-275 aa

XP_057782992.1

334 aa

167

334

SAGA-Tad1

PF12767 SAGA-Tad1 6-275 aa

XP_057782993.1

334 aa

167

334

SAGA-Tad1

PF12767 SAGA-Tad1 6-275 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782991.1`	Pfam	`PF12767`	SAGA-Tad1	Family	6	275	2.3e-54	185.4	Transcriptional regulator of RNA polII, SAGA, subunit
`XP_057782992.1`	Pfam	`PF12767`	SAGA-Tad1	Family	6	275	2.3e-54	185.4	Transcriptional regulator of RNA polII, SAGA, subunit
`XP_057782993.1`	Pfam	`PF12767`	SAGA-Tad1	Family	6	275	2.3e-54	185.4	Transcriptional regulator of RNA polII, SAGA, subunit

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057927008.1
TATCGGCTGTTGTATTTCACTCTTTTGTCACTAATTTTCATTTTATTTTTAATTTCGGAATTTCACACTCGATCAAACTAGCAATTTGGGGAGACAATACAATAAACCCCATCGAAAACAATAAATAATTACTAAAAAGAAAAAGAAAAAGAAAAACCCCACGCTGCTCGTCGACTCCAACTCTCCTAAACCAGAGTTGAATTAAAATGGTGGCTAGCCATCATTTTACTCGAATCGACACACTAGAGCTGAAAGAGCTT...

XM_057927010.1
ATTTTTAATTTCGGAATTTCACACTCGATCAAACTAGCAATTTGGGGAGACAATACAATAAACCCCATCGAAAACAATAAATAATTACTAAAAAGAAAAAGAAAAAGAAAAACCCCACGCTGCTCGTCGACTCCAACTCTCCTAAACCAGGTCAATTCTAGCTTTCTACTTCTATTTACACTTGAATTTGATTTTCAGTAACTGGGATTTTTCGTTGTCGTAGAATCGCCAAGTGGGGTTTGTGATTTTGATCGCAATTG...

CDS

3 records

下载 CDS FASTA

LOC131000876
ATGGTGGCTAGCCATCATTTTACTCGAATCGACACACTAGAGCTGAAAGAGCTTATTTATGAAAAGATCGGGCACCAAAGAGGTGAAACCTACTTCAATCACCTGAAGAGATTTCTGAGTTCGAAGCTGAGCAAGGATGACTTTGATAAGAGCTGCATAGAGACGATTGGGAGGGAGAATCTCTCTATCCATAATCGCCTCATCCGATCCATCATCCAGAATGCTTGTCGGGCTAAAACTCCGCCTCAAAAAGCTCGAAA...

Protein

3 records

下载 Protein FASTA

XP_057782991.1
MVASHHFTRIDTLELKELIYEKIGHQRGETYFNHLKRFLSSKLSKDDFDKSCIETIGRENLSIHNRLIRSIIQNACRAKTPPQKARKVEALGVKVAHGHPRNHLQSLYGDAFPHSPRKCRSPISRDRKFRDRPSPLGPLGKSPSLTCEETVSRIQEQQSAAELQTVSGRPPTGAASVEDGEEVEQCAVIPVSQRWSSITAPLGVSVDLGGARKAPHHSGLSCQTSGELPDTRSLGRRLQKKLASEGVGISLDGANLLNNG...

XP_057782992.1
MVASHHFTRIDTLELKELIYEKIGHQRGETYFNHLKRFLSSKLSKDDFDKSCIETIGRENLSIHNRLIRSIIQNACRAKTPPQKARKVEALGVKVAHGHPRNHLQSLYGDAFPHSPRKCRSPISRDRKFRDRPSPLGPLGKSPSLTCEETVSRIQEQQSAAELQTVSGRPPTGAASVEDGEEVEQCAVIPVSQRWSSITAPLGVSVDLGGARKAPHHSGLSCQTSGELPDTRSLGRRLQKKLASEGVGISLDGANLLNNG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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