Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.

Resolved gene

`SmilChr08G001281`

Chromosome: Chr08 Coordinates: 10207058-10207784 Strand: + Biotype: protein_coding

Basic Information

Standard Gene ID	`SmilChr08G001281`
Name	SmilChr08G001281
Description	uncharacterized SmilChr08G001281
Chromosome / SeqID	Chr08 / NC_080394.1
Coordinates and Strand	10207058 - 10207784 / `+`

ID Mapping

NCBI Gene ID	`LOC131000932`
GeneID	`131000932`
locus_tag	`-`
NCBI Name	`LOC131000932`
Original query	`SmilChr08G001281`

Open ID mapping

Functional Annotation

Source	GFF basic annotation; Arabidopsis/Rice homolog
Description	hit=Os04g0611300; species=rice; confidence=low
Product	hit=Os04g0611300; species=rice; confidence=low
Arabidopsis	`-` -
Rice	`Os04g0611300` - identity=45.5; qcov=0.934; evalue=4.25e-13; confidence=low
GO	-
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:131000932

Open annotation module

Subcellular Localization Top 5

Rank	Location	Chinese	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057783069.1`
2	Nucleolus	核仁	1.00000	`XP_057783069.1`
3	Chromosome	染色体	0.00000	`XP_057783069.1`
4	Centromere	着丝粒	0.00000	`XP_057783069.1`
5	Chromatin	染色质	0.00000	`XP_057783069.1`

Open subcellular search

EMS Mutant Variants

The table shows the first 12 candidate EMS variants for this gene. Open the EMS module for full filtering and downloads.

Position	REF	ALT	Type	Effect	Carriers	Samples
`Chr8:10207242`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B36,C44
`Chr8:10207246`	`TC`	`T`	1bp_deletion	frameshift_variant	1	C44
`Chr8:10207246`	`TC`	`T`	1bp_deletion	CDS_variant	1	C44
`Chr8:10207260`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B36,C44
`Chr8:10207280`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B91,C30
`Chr8:10207294`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B84
`Chr8:10207295`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C50
`Chr8:10207339`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B57
`Chr8:10207365`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B40,C49,C62,C73,D11
`Chr8:10207384`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B109,B51,B91,C49
`Chr8:10207408`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C81
`Chr8:10207413`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B109,B91,C49

Open EMS variants

Predicted Protein Domains

This gene has no available Pfam domain hit in the current release.

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cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

1 records

Download cDNA FASTA

XM_057927086.1
TGAAAAAAAAAATCTTGCGGTTTGTCTGGTAACCCGGTCTATAAAAAAACATATATATACACATAAACGTGGCAGCACAGAAGAATTAGGCCAGAACCCTAATTTTGTTGTGCAGCAAAATTTGGCGCCGCCGACGGGAGGAATAGAATTATTCGATTAACGTAGTAGCGATGGGGAAATCGATCAGATCGAAAAGGGAGAAGAGGCTGAGGTCGATAAGGAGAGAGATGGTGGAGCCGATTTACGACAAGAAGGACGCC...

CDS

1 records

Download CDS FASTA

LOC131000932
ATGGGGAAATCGATCAGATCGAAAAGGGAGAAGAGGCTGAGGTCGATAAGGAGAGAGATGGTGGAGCCGATTTACGACAAGAAGGACGCCGCGAAGCTAGCCATCCAGGAGGCCGCCCTCGCCGCTCCCAAGCTTCCGGTTAGGTCCACTCCCTCCGCCAACGAGGCCTCCGACTCTTTCGCCGCCATGGACGTCGAGACTGCTGATGATAATCAGAGCTCTAAATTCCTCAAGCCTATCGGAAAGAAGCTCAAGAAGAA...

Protein

1 records

Download Protein FASTA

XP_057783069.1
MGKSIRSKREKRLRSIRREMVEPIYDKKDAAKLAIQEAALAAPKLPVRSTPSANEASDSFAAMDVETADDNQSSKFLKPIGKKLKKKIKIAKKKFHGKGKIRRKNV

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

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