当前解析结果
SmilChr08G001287| 统一新 Gene ID | SmilChr08G001287 |
|---|---|
| 名称 | SmilChr08G001287 |
| 描述 | DNA repair protein REV1 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 10256658 - 10269334 / + |
| NCBI Gene ID | LOC131000821 |
|---|---|
| GeneID | 131000821 |
| locus_tag | - |
| NCBI Name | LOC131000821 |
| 原始查询 | SmilChr08G001287 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DNA repair protein REV1 |
| 产物 | DNA repair protein REV1 |
| Arabidopsis | AT5G44750 (REV1)DNA-directed DNA polymerase [Source:NCBI gene (formerly Entrezgene);Acc:834504] identity=51.2; qcov=0.996; evalue=0; confidence=high |
| Rice | Os06g0691000 (Rev1)- identity=44.9; qcov=1; evalue=0; confidence=medium |
| GO | GO:0003684 (damaged DNA binding); GO:0003887 (DNA-directed DNA polymerase activity); GO:0005634 (nucleus); GO:0017125 (deoxycytidyl transferase activity); GO:0042276 (error-prone translesion synthesis); GO:0070987 (error-free translesion synthesis) |
| KEGG | smil03460 (Fanconi anemia pathway - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00533 (BRCT); PF00817 (IMS); PF11799 (IMS_C); PF12738 (PTCB-BRCT); PF16589 (BRCT_2); PF21704 (POLH-Rev1_HhH); PF21999 (IMS_HHH_1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000821 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057782895.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057782895.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057782895.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057782895.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057782895.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:10256849 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C4 |
Chr8:10256917 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B73,C29,C3 |
Chr8:10257882 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B123,B25 |
Chr8:10257896 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A16 |
Chr8:10258799 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B24,C21,C36,D6 |
Chr8:10258806 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B55,B74,C2 |
Chr8:10258807 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr8:10258954 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B49 |
Chr8:10259036 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C51 |
Chr8:10260386 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:10260387 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A24,B104 |
Chr8:10260727 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B13,B88,C37 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057782895.1PF00533
BRCT 96-171 aa
PF16589
BRCT_2 97-184 aa
PF12738
PTCB-BRCT 102-167 aa
PF00817
IMS 395-542 aa
PF21999
IMS_HHH_1 568-619 aa
PF21704
POLH-Rev1_HhH 572-618 aa
PF11799
IMS_C 629-747 aa
XP_057782896.1PF00533
BRCT 96-171 aa
PF16589
BRCT_2 97-184 aa
PF12738
PTCB-BRCT 102-167 aa
PF00817
IMS 395-542 aa
PF21999
IMS_HHH_1 568-619 aa
PF21704
POLH-Rev1_HhH 572-618 aa
PF11799
IMS_C 629-747 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057782895.1 |
Pfam | PF00533 |
BRCT | Domain | 96 | 171 | 1.7e-09 | 38.4 | BRCA1 C Terminus (BRCT) domain |
XP_057782895.1 |
Pfam | PF16589 |
BRCT_2 | Domain | 97 | 184 | 1.5e-07 | 32.4 | BRCT domain |
XP_057782895.1 |
Pfam | PF12738 |
PTCB-BRCT | Domain | 102 | 167 | 7e-05 | 23.5 | twin BRCT domain |
XP_057782895.1 |
Pfam | PF00817 |
IMS | Family | 395 | 542 | 1.8e-45 | 155.2 | impB/mucB/samB family |
XP_057782895.1 |
Pfam | PF21999 |
IMS_HHH_1 | Domain | 568 | 619 | 2.2e-21 | 76.8 | DNA polymerase-iota, thumb domain |
XP_057782895.1 |
Pfam | PF21704 |
POLH-Rev1_HhH | Motif | 572 | 618 | 4.6e-07 | 30.7 | DNApol eta/Rev1, HhH motif |
XP_057782895.1 |
Pfam | PF11799 |
IMS_C | Domain | 629 | 747 | 1.8e-18 | 67.7 | impB/mucB/samB family C-terminal domain |
XP_057782896.1 |
Pfam | PF00533 |
BRCT | Domain | 96 | 171 | 1.7e-09 | 38.4 | BRCA1 C Terminus (BRCT) domain |
XP_057782896.1 |
Pfam | PF16589 |
BRCT_2 | Domain | 97 | 184 | 1.4e-07 | 32.4 | BRCT domain |
XP_057782896.1 |
Pfam | PF12738 |
PTCB-BRCT | Domain | 102 | 167 | 7.1e-05 | 23.4 | twin BRCT domain |
XP_057782896.1 |
Pfam | PF00817 |
IMS | Family | 395 | 542 | 1.8e-45 | 155.2 | impB/mucB/samB family |
XP_057782896.1 |
Pfam | PF21999 |
IMS_HHH_1 | Domain | 568 | 619 | 2.2e-21 | 76.8 | DNA polymerase-iota, thumb domain |
XP_057782896.1 |
Pfam | PF21704 |
POLH-Rev1_HhH | Motif | 572 | 618 | 4.6e-07 | 30.7 | DNApol eta/Rev1, HhH motif |
XP_057782896.1 |
Pfam | PF11799 |
IMS_C | Domain | 629 | 747 | 1.8e-18 | 67.7 | impB/mucB/samB family C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。