Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001300`

染色体: Chr08 坐标: 10344703-10346484 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001300`
名称	SmilChr08G001300
描述	uncharacterized SmilChr08G001300
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	10344703 - 10346484 / `-`

ID 对照

NCBI Gene ID	`LOC131000919`
GeneID	`131000919`
locus_tag	`-`
NCBI Name	`LOC131000919`
原始查询	`SmilChr08G001300`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ribosome biosis protein [Source:NCBI gene (formerly Entrezgene);Acc:814693]; symbol=AT2G01640; hit=AT2G01640; species=arabidopsis; confidence=medium
产物	ribosome biosis protein [Source:NCBI gene (formerly Entrezgene);Acc:814693]; symbol=AT2G01640; hit=AT2G01640; species=arabidopsis; confidence=medium
Arabidopsis	`AT2G01640` (AT2G01640) ribosome biosis protein [Source:NCBI gene (formerly Entrezgene);Acc:814693] identity=54.1; qcov=0.871; evalue=1.92e-40; confidence=medium
Rice	`Os12g0244500` - identity=50; qcov=0.735; evalue=8.25e-27; confidence=medium
GO	GO:0000462 (maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)); GO:0005730 (nucleolus); GO:0030686 (90S preribosome); GO:0030688 (preribosome, small subunit precursor)
KEGG	-
Pfam	PF15341 (SLX9)
InterPro	-
eggNOG	-
NR	GeneID:131000919

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057783049.1`
2	Nucleolus	核仁	1.00000	`XP_057783049.1`
3	Nucleolus rim	Nucleolus rim	0.80000	`XP_057783049.1`
4	Nucleolar fibrillar center	Nucleolar fibrillar center	0.40000	`XP_057783049.1`
5	Nucleoplasm	核质	0.20000	`XP_057783049.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:10345108`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr8:10345244`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B138,C19,C34
`Chr8:10345423`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:10345476`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B100,B67,B7,C33
`Chr8:10345478`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B45,B62,C75
`Chr8:10346100`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B121,C10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783049.1

155 aa

155

SLX9

PF15341 SLX9 14-120 aa

XP_057783050.1

155 aa

155

SLX9

PF15341 SLX9 14-120 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783049.1`	Pfam	`PF15341`	SLX9	Family	14	120	4.7e-11	44.0	Ribosome biogenesis protein SLX9
`XP_057783050.1`	Pfam	`PF15341`	SLX9	Family	14	120	4.7e-11	44.0	Ribosome biogenesis protein SLX9

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057927066.1
TGCAATTGGGCTTGACTATAAAAAGGCCGTTTTAGTGGGCCTAAATATAAAACTAGGTGATCTATCTCTGTAAACCCTAATCATTCACCCCTGAATTTCTAGCTCTGACTCGATTGAAGGATAAATTTCGGATACGTGATAATCCCCATCTCGCGAGTAATTTGTGTTTAATTCTTCGTTTGTATACGATAACCAGAATACAAGGACCGAAACTACATTGTACCGATGGGAAAAACCAGCGCGCGTTCTGATGGGAAGTC...

XM_057927067.1
GTGATCTATCTCTGTAAACCCTAATCATTCACCCCTGAATTTCTAGCTCTGACTCGATTGAAGGATAAATTTCGGATACGTGATAACCAGAATACAAGGACCGAAACTACATTGTACCGATGGGAAAAACCAGCGCGCGTTCTGATGGGAAGTCGAGTGCAGATCGCAAGTTCGATAAGAAATTGGAATTTTACGAGAAGGTCAGAGCAGCACTTCAAAGCAAAGCCATTAGTAAGGTGCAAAAGCAAAAGAAACGAAGC...

CDS

2 records

下载 CDS FASTA

LOC131000919
ATGGGAAAAACCAGCGCGCGTTCTGATGGGAAGTCGAGTGCAGATCGCAAGTTCGATAAGAAATTGGAATTTTACGAGAAGGTCAGAGCAGCACTTCAAAGCAAAGCCATTAGTAAGGTGCAAAAGCAAAAGAAACGAAGCAGGCAAAAGAAACTAAAAGTATACGATCTGTCTTCCCTCACGGAGTGCCTCCCTGAATTAAACGCTCCCTCGTCATCAGCACCAGCTGAATTGAAACTTAATTGCAAGAGGAGAAATGA...

Protein

2 records

下载 Protein FASTA

XP_057783049.1
MGKTSARSDGKSSADRKFDKKLEFYEKVRAALQSKAISKVQKQKKRSRQKKLKVYDLSSLTECLPELNAPSSSAPAELKLNCKRRNDLVLKESNKLKMVINHPVYQSDPLAAIFQHLQMTQPATDKKPKKKDGKARKSKVKKKKKVTKDTESMDI

XP_057783050.1
MGKTSARSDGKSSADRKFDKKLEFYEKVRAALQSKAISKVQKQKKRSRQKKLKVYDLSSLTECLPELNAPSSSAPAELKLNCKRRNDLVLKESNKLKMVINHPVYQSDPLAAIFQHLQMTQPATDKKPKKKDGKARKSKVKKKKKVTKDTESMDI

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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