Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001301`

染色体: Chr08 坐标: 10346504-10350241 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001301`
名称	SmilChr08G001301
描述	DNA-directed RNA polymerases II, IV and V subunit 3-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	10346504 - 10350241 / `+`

ID 对照

NCBI Gene ID	`LOC131000880`
GeneID	`131000880`
locus_tag	`-`
NCBI Name	`LOC131000880`
原始查询	`SmilChr08G001301`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DNA-directed RNA polymerases II, IV and V subunit 3-like
产物	DNA-directed RNA polymerases II%2C IV and V subunit 3-like
Arabidopsis	`AT2G15430` (NRPB3) DNA-directed RNA polymerase family protein [Source:NCBI gene (formerly Entrezgene);Acc:816035] identity=77.1; qcov=1; evalue=0; confidence=high
Rice	`Os09g0110400` - identity=73.2; qcov=1.03; evalue=2.79e-173; confidence=high
GO	GO:0003677 (DNA binding); GO:0003899 (DNA-directed RNA polymerase activity); GO:0005665 (RNA polymerase II, core complex); GO:0006351 (DNA-templated transcription); GO:0046983 (protein dimerization activity)
KEGG	smil03020 (RNA polymerase - Salvia miltiorrhiza (redroot sage)); smil03420 (Nucleotide excision repair - Salvia miltiorrhiza (redroot sage))
Pfam	PF01000 (RNA_pol_A_bac); PF01193 (RNA_pol_L)
InterPro	-
eggNOG	-
NR	GeneID:131000880

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057782998.1`
2	Chromosome	染色体	0.80000	`XP_057782998.1`
3	Cytoplasm	细胞质	0.20000	`XP_057782998.1`
4	Centromere	着丝粒	0.00000	`XP_057782998.1`
5	Chromatin	染色质	0.00000	`XP_057782998.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:10346731`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B45,B62,C75
`Chr8:10346772`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:10346992`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B56,B96,C85
`Chr8:10348279`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B45,B62,C75
`Chr8:10348450`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B103,C10,C28,C60,C81
`Chr8:10348454`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C34
`Chr8:10348469`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B104,B138,C19,C34
`Chr8:10349223`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B105,B118,B18,B70

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782998.1

319 aa

160

319

RNA_pol_L

RNA_pol_A_bac

PF01193 RNA_pol_L 23-293 aa PF01000 RNA_pol_A_bac 58-179 aa

XP_057782999.1

319 aa

160

319

RNA_pol_L

RNA_pol_A_bac

PF01193 RNA_pol_L 23-293 aa PF01000 RNA_pol_A_bac 58-179 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782998.1`	Pfam	`PF01193`	RNA_pol_L	Domain	23	293	2.5e-21	75.9	RNA polymerase Rpb3/Rpb11 dimerisation domain
`XP_057782998.1`	Pfam	`PF01000`	RNA_pol_A_bac	Domain	58	179	2.7e-20	73.5	RNA polymerase Rpb3/RpoA insert domain
`XP_057782999.1`	Pfam	`PF01193`	RNA_pol_L	Domain	23	293	2.5e-21	75.9	RNA polymerase Rpb3/Rpb11 dimerisation domain
`XP_057782999.1`	Pfam	`PF01000`	RNA_pol_A_bac	Domain	58	179	2.7e-20	73.5	RNA polymerase Rpb3/RpoA insert domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057927015.1
ATAATAAAAAAGCAAAAAAGAAAAGAAGAGTACAAAAACTACAGAGCAACGTACTACTCACTTTTCCCAAAACGTTTTTACCCCCAATTTCCCTCCCGAGGCCAGAGGAGGGTTTAAATCAAAAACCCTTACTGAGAGAGAGAGGAGGGGTAGTGAGAGAGAGGAGAAATCGAAATGGAGGGCGTTTCATACCAGAGATTCCCCAAAATCAAAATTCGGGAGGTGAAGCACGACTACATGCAGTTCGAGCTGCGAGAGAC...

XM_057927016.1
CAAAAACTACAGAGCAACGTACTACTCACTTTTCCCAAAACGTTTTTACCCCCAATTTCCCTCCCGAGGCCAGAGGAGGGTTTAAATCAAAAACCCTTACTGAGAGAGAGAGGAGGGGTAGTGAGAGAGAGGAGAAATCGAAATGGAGGGCGTTTCATACCAGAGATTCCCCAAAATCAAAATTCGGGAGGTGAAGCACGACTACATGCAGTTCGAGCTGCGAGAGACCGACGCTAGCATCGCCAACGCTCTCCGCCGCG...

CDS

2 records

下载 CDS FASTA

LOC131000880
ATGGAGGGCGTTTCATACCAGAGATTCCCCAAAATCAAAATTCGGGAGGTGAAGCACGACTACATGCAGTTCGAGCTGCGAGAGACCGACGCTAGCATCGCCAACGCTCTCCGCCGCGTGATGATCGCCGAAGTCCCCACCATCGCTATAGATTTGGTGGAAATCGAGGTGAACTCCTCCGTGTTGAACGACGAATTCATCGCCCACCGCCTTGGCCTGGTCCCTCTCACCAGCGAGCGCGCCATGTCCATGCGCTTCTC...

Protein

2 records

下载 Protein FASTA

XP_057782998.1
MEGVSYQRFPKIKIREVKHDYMQFELRETDASIANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLVPLTSERAMSMRFSRDCDACDGDGQCEYCSVEFHLRAKCINDTTLDVTSKDLYSSDHTVVPVDFSDASSTGDNADNRGIIIVKLRRGQELILRAIARKGIGKDHAKWSPAATVTFMYEPEILINEELMETLTMAEKQEFVDSSPTKVFDINPNTGQVYVDNAENYTYDDEVLKKAEAMGKPGLVEIH...

XP_057782999.1
MEGVSYQRFPKIKIREVKHDYMQFELRETDASIANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLVPLTSERAMSMRFSRDCDACDGDGQCEYCSVEFHLRAKCINDTTLDVTSKDLYSSDHTVVPVDFSDASSTGDNADNRGIIIVKLRRGQELILRAIARKGIGKDHAKWSPAATVTFMYEPEILINEELMETLTMAEKQEFVDSSPTKVFDINPNTGQVYVDNAENYTYDDEVLKKAEAMGKPGLVEIH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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