Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001302`

染色体: Chr08 坐标: 10368713-10371514 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001302`
名称	SmilChr08G001302
描述	cyclin-D3-1-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	10368713 - 10371514 / `-`

ID 对照

NCBI Gene ID	`LOC131000863`
GeneID	`131000863`
locus_tag	`-`
NCBI Name	`LOC131000863`
原始查询	`SmilChr08G001302`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cyclin-D3-1-like
产物	cyclin-D3-1-like
Arabidopsis	`AT4G34160` (CYCD3;1) CYCLIN D3;1 [Source:NCBI gene (formerly Entrezgene);Acc:829564] identity=47.5; qcov=0.748; evalue=4.33e-76; confidence=high
Rice	`Os07g0620800` (CycD2) - identity=36.4; qcov=0.669; evalue=5.85e-37; confidence=medium
GO	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity); GO:0000307 (cyclin-dependent protein kinase holoenzyme complex); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0016538 (cyclin-dependent protein serine/threonine kinase regulator activity); GO:0044772 (mitotic cell cycle phase transition)
KEGG	smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00134 (Cyclin_N); PF02984 (Cyclin_C)
InterPro	-
eggNOG	-
NR	GeneID:131000863

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057782969.1`
2	Chromosome	染色体	0.00000	`XP_057782969.1`
3	Centromere	着丝粒	0.00000	`XP_057782969.1`
4	Chromatin	染色质	0.00000	`XP_057782969.1`
5	Telomere	端粒	0.00000	`XP_057782969.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:10369079`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B82
`Chr8:10370430`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B138,C19,C34
`Chr8:10370638`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:10370670`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:10371060`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:10371106`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B56,B96,C85

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782969.1

370 aa

185

370

Cyclin_N

Cyclin_C

PF00134 Cyclin_N 129-236 aa PF02984 Cyclin_C 238-342 aa

XP_057782970.1

369 aa

184

369

Cyclin_N

Cyclin_C

PF00134 Cyclin_N 129-236 aa PF02984 Cyclin_C 238-341 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782969.1`	Pfam	`PF00134`	Cyclin_N	Domain	129	236	3.2e-22	79.3	Cyclin, N-terminal domain
`XP_057782969.1`	Pfam	`PF02984`	Cyclin_C	Domain	238	342	4.1e-14	53.3	Cyclin, C-terminal domain
`XP_057782970.1`	Pfam	`PF00134`	Cyclin_N	Domain	129	236	3.1e-22	79.3	Cyclin, N-terminal domain
`XP_057782970.1`	Pfam	`PF02984`	Cyclin_C	Domain	238	341	1.7e-11	44.9	Cyclin, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057926987.1
GTGATGCCCTATGATAAAATCTCCTACTTTTATCTCTCTTCTCAAGAACTGCAGTGTCCATTGAGGTTGAGAGAGAGAGAGAGAGGGAGAGAATGGAGCTTGCTTTACTTTTTTCTTCTTTCACTGTATAAACGAAAAGAAACAGCCCTTGTGAGCATGGCTGTGGACCACAACAATGCACGAAAATCTTTGCTTCTTGACACGCTTTACTGTGAAGAAGAAAAAGAAGAAGAAAAATGTGAAGAAGAAGAAAGTAAAAG...

XM_057926986.1
GATGCCCTATGATAAAATCTCCTACTTTTATCTCTCTTCTCAAGAACTGCAGTGTCCATTGAGGTTGAGAGAGAGAGAGAGAGGGAGAGAATGGAGCTTGCTTTACTTTTTTCTTCTTTCACTGTATAAACGAAAAGAAACAGCCCTTGTGAGCATGGCTGTGGACCACAACAATGCACGAAAATCTTTGCTTCTTGACACGCTTTACTGTGAAGAAGAAAAAGAAGAAGAAAAATGTGAAGAAGAAGAAAGTAAAAGTG...

CDS

2 records

下载 CDS FASTA

LOC131000863
ATGCCCTATGATAAAATCTCCTACTTTTATCTCTCTTCTCAAGAACTGCAGTGTCCATTGAGGTTGAGAGAGAGAGAGAGAGGGAGAGAATGGAGCTTGCTTTACTTTTTTCTTCTTTCACTGTATAAACGAAAAGAAACAGCCCTTGTGAGCATGGCTGTGGACCACAACAATGCACGAAAATCTTTGCTTCTTGACACGCTTTACTGTGAAGAAGAAAAAGAAGAAGAAAAATGTGAAGAAGAAGAAAGTAAAAGTGA...

Protein

2 records

下载 Protein FASTA

XP_057782969.1
MPYDKISYFYLSSQELQCPLRLRERERGREWSLLYFFLLSLYKRKETALVSMAVDHNNARKSLLLDTLYCEEEKEEEKCEEEESKSEITLNDNNHSLVFEYDDEEIESLLRKERETSLESTRFSISSFFCAARKQAVEFVLTISSRHGFSASAAVLAVNFVDRFLLDYLSLEKDEKRPWLMQLVAVACLSLAAKMEETHVPLLVDLQVEDAKYLFEAKTIKRMELLILSALNWRMNPVTPLSFIDHFVRRLGLKKSCVIH...

XP_057782970.1
MPYDKISYFYLSSQELQCPLRLRERERGREWSLLYFFLLSLYKRKETALVSMAVDHNNARKSLLLDTLYCEEEKEEEKCEEEESKSEITLNDNNHSLVFEYDDEEIESLLRKERETSLESTRFSISSFFCAARKQAVEFVLTISSRHGFSASAAVLAVNFVDRFLLDYLSLEKDEKRPWLMQLVAVACLSLAAKMEETHVPLLVDLQVEDAKYLFEAKTIKRMELLILSALNWRMNPVTPLSFIDHFVRRLGLKKSCVIH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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